View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_64 (Length: 325)
Name: NF15302_low_64
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 2947373 - 2947649
Alignment:
| Q |
34 |
ttcccttagtgccttccggaagattcctggaactatatttgcaagtcttgcagtttcagttatgagctgtgcaaatcatcattcattgaatttcaaataa |
133 |
Q |
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| T |
2947373 |
ttcccttagtgccttccggaagattcctggaactatatttgcaagtcttgcagtttcggttatgagctgtgcaaatcatcattcattgaatttcaaataa |
2947472 |
T |
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| Q |
134 |
gataaattaacacacaatgtgccacattaaaaatgaagaaannnnnnnaactaacctgaaatgtaaatgtcattgatttatattcttgccatgtgactcc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947473 |
gataaattaacacacaatgtgccacattaaaaatgaagaaatttttttaactaacctgaaatgtaaatgtcattgatttatattcttgccatgtgactcc |
2947572 |
T |
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| Q |
234 |
tgagttaggattctcacgtcgttcaaggatggcttcatgttcttcctaaaagacaaagtaccgaggaagtcaaaatc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947573 |
tgagttaggattctcacgtcgttcaaggatggcttcatgttcttcctaaaagacaaagtaccgaggaagtcaaaatc |
2947649 |
T |
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