View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_65 (Length: 320)
Name: NF15302_low_65
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_65 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 38315456 - 38315775
Alignment:
| Q |
1 |
gtactagtaccaatttctagactatcataagtaaaatatgcaaaagtcacagcaaccaaactaaaccacagttcattaaagttgcggaggtttctagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315456 |
gtactagtaccaatttctagactatcataagtaaaatatgcaaaagtcacagcaaccaaactaaaccacagttcattaaagttgcggaggtttctagtct |
38315555 |
T |
|
| Q |
101 |
acttacatcgtgcagaattttccgcgcttcagtatccattgttagtcacaatctggcaatttcagttaagcaagaacaccattaactgacctgaaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315556 |
acttacatcgtgcagaattttccgcgcttcagtatccattgttagtcacaatctggcaatttcagttaagcaagaacaccattaactgacctgaaaatgt |
38315655 |
T |
|
| Q |
201 |
aacaacccaattttagcaagtaatttcagtgtaaaacacaataaacccacagatcaaaagcttaaatcaaaattgtgggagaaactcatcgctcatgaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315656 |
aacaacccaattttagcaagtaatttcagtgtaaaacacaataaacccacagatcaaaagcttaaatcaaaattgtgggagaaactcatcgctcatgaat |
38315755 |
T |
|
| Q |
301 |
caaaggaacaaatccaccgt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
38315756 |
caaaggaacaaatccaccgt |
38315775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 41 - 298
Target Start/End: Original strand, 2631725 - 2631980
Alignment:
| Q |
41 |
caaaagtcacagcaaccaaactaaaccacagttcattaaagttgcg-----gaggtttctagtctacttacatcgtgcagaattttccgcgcttcagtat |
135 |
Q |
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| T |
2631725 |
caaaagtcacggcgaccaaactaaaccacagttcataaaagtcgcgaaatcgaggtttcta-----cttacatcgtgcagaattttccgcgcttcagtat |
2631819 |
T |
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| Q |
136 |
ccattgttagtcacaatctggcaatttcagttaagcaagaacaccattaactgacctgaaaatgtaacaacccaattttagcaagtaatttcagtgtaaa |
235 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||||||| |
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| T |
2631820 |
ccattggtagtcacaatctggcaatttcagttaaacaagagcaccattaactgacctgaaaaggtaacaaccaaattatagcaagtaattaccgtgtaaa |
2631919 |
T |
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| Q |
236 |
acacaataaacccacagatcaaaagcttaaatcaaaattgtgggagaaactcatcgctcatga |
298 |
Q |
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| T |
2631920 |
acacaacaaacccacagatc--aagcttaaatcaaaattgtgggagaaactcatcgctcatga |
2631980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 8287 - 8032
Alignment:
| Q |
41 |
caaaagtcacagcaaccaaactaaaccacagttcattaaagttgcg-----gaggtttctagtctacttacatcgtgcagaattttccgcgcttcagtat |
135 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
8287 |
caaaagtcacggcgaccaaactaaaccacagttcataaaagtcgcgaaatcgaggtttcta-----cttacatcgtgcagaattttccgcgctttagtat |
8193 |
T |
|
| Q |
136 |
ccattgttagtcacaatctggcaatttcagttaagcaagaacaccattaactgacctgaaaatgtaacaacccaattttagcaagtaatttcagtgtaaa |
235 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||||||| |
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| T |
8192 |
ccattggtagtcacaatctggcaatttcagttaatcaagagcaccattaactgacctgaaaaggtaacaaccaaattatagcaagtaattaccgtgtaaa |
8093 |
T |
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| Q |
236 |
acacaataaacccacagatcaaaagcttaaatcaaaattgtgggagaaactcatcgctcatga |
298 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092 |
acacaacaaacccacagatc--aagcttaaatcaaaattgtgggagaaactcatcgctcatga |
8032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 44970 - 45116
Alignment:
| Q |
172 |
aagaacaccattaactgacctgaaaatgtaacaacccaattttagcaagtaatttcagtgtaaaacacaataaacccacagatcaaaagcttaaatcaaa |
271 |
Q |
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|||| |||||||||||||| |||||| ||||| ||| |||| |||||| ||||| |||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
44970 |
aagagcaccattaactgacttgaaaaggtaactaccaaattatagcaaataattagagtgtaaaacacaacaaacccacatatcaa--gcttaaatcaaa |
45067 |
T |
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| Q |
272 |
attgtgggagaaactcatcgctcatgaatcaaaggaacaaatccaccgt |
320 |
Q |
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| T |
45068 |
attgtgggagaaactcatcactcatgaatcaaaggaacaaatccaccgt |
45116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 44862 - 44936
Alignment:
| Q |
8 |
taccaatttctagactatcataagtaaaatatgcaaaagtcacagcaaccaaactaaaccacagttcattaaagt |
82 |
Q |
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|||||||||| ||||||| |||||| ||||||||||||||||| || | |||||||||||||||||||| ||||| |
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| T |
44862 |
taccaatttccagactatgataagtgaaatatgcaaaagtcacggcgatcaaactaaaccacagttcataaaagt |
44936 |
T |
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