View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_66 (Length: 313)
Name: NF15302_low_66
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_66 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 54862603 - 54862300
Alignment:
| Q |
13 |
aactaataatagattgattcaagtggtaagggatttgtggacatatggaaaaaattcagttgagaaacaagaacccaccttgtgtgtcccacaagttccc |
112 |
Q |
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| T |
54862603 |
aactaataatagattgattcaagtggtaagggatttgtggacatatggaaaaaattcagttgagaagcaagaacccatcttgtgtgccccacaagttccc |
54862504 |
T |
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| Q |
113 |
agacggagattaatcaccgttaaacggtggtaaaatttcataataatatcatgttaaccc---nnnnnnnnnnntgactaacaacaattttgtcaccgga |
209 |
Q |
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| T |
54862503 |
agacggagattaatcaccgttaaacggtggtaaaatttcatactaatatcatgttaacccaaaaaaaaaaaaaacgactaacaacaattttgtcaccgga |
54862404 |
T |
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| Q |
210 |
gaatagaaagtcttaatgtgtatactggttgtagttgtaaacaagtcaagctacttgacaaaagtctgagtatgaacaaggacccgatgaggatatatgg |
309 |
Q |
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| T |
54862403 |
gaatagaaagtcttaatgtgtatactggttgtagttgtaaacaagtcaagctacttgacaaaagtctgagtatgaacaaggacccgatgaggatatatgg |
54862304 |
T |
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| Q |
310 |
agaa |
313 |
Q |
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| T |
54862303 |
agaa |
54862300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 54857537 - 54857481
Alignment:
| Q |
247 |
taaacaagtcaagctacttgacaaaagtctgagtatgaacaaggacccgatgaggat |
303 |
Q |
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| T |
54857537 |
taaataagtcaagctaattcacaaaagtctgagtatgaacaaggacccgatggggat |
54857481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 22310629 - 22310581
Alignment:
| Q |
81 |
aagaacccaccttgtgtgtcccacaagttcccagacggagattaatcac |
129 |
Q |
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| T |
22310629 |
aagaacccaccttgcgtgtcccacaaattctctgacggagattagtcac |
22310581 |
T |
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