View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_68 (Length: 306)
Name: NF15302_low_68
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 36738932 - 36739220
Alignment:
| Q |
3 |
aaatgaaaacagaaacaatatatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttt-tcgtcttcatgaaagaaa |
101 |
Q |
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| T |
36738932 |
aaatgaaaacagaaacaatatatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcattttttcgtcttcatgaaagaaa |
36739031 |
T |
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| Q |
102 |
ctggagtttctgaagcagattcattggaccttttctttcccttgtcaaccttcaaaagtaaaagacaaattgtctcaaatcaccataacgattaaaacat |
201 |
Q |
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| T |
36739032 |
ctggagtttttgaagcagattaattggaccttttctttcccttgtcaaccttcaaaagtaaaagacaaattgtatcaaatcaccataacaattaaaacat |
36739131 |
T |
|
| Q |
202 |
aaaataacaccttgataacaaatgtaccattaccttcttcacagtttcatcagaatcttcatctttctcctcctttggatcaacaacct |
290 |
Q |
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| T |
36739132 |
aaaataacaccttgatagcaaatgtaccattaccgtcttcacagtttcatcataatcttcatctttctcctcctttggatcaacaacct |
36739220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 35981189 - 35981003
Alignment:
| Q |
3 |
aaatgaaaacagaaacaatatatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttttcgtcttcatgaaagaaac |
102 |
Q |
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| T |
35981189 |
aaatgaaaacagaaacaatatatatttattgcaaaacataatacaacttggtcttaccagtcttctcaggagtggcattttttgatttcttgctagaaat |
35981090 |
T |
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| Q |
103 |
tggagtttctgaagcagattcattggaccttttctttcccttgtcaaccttcaaaagtaaaagacaa-attgtctcaaatcaccata |
188 |
Q |
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| T |
35981089 |
tggagtttttgaagcagattcattgggcctcttctttccctggtcaaccttcaaaacaaaaagacaagattatcccaaatcaccata |
35981003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 28943016 - 28943149
Alignment:
| Q |
22 |
atatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttttcgtcttcatgaaagaaactggagtttctgaagcagat |
121 |
Q |
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| T |
28943016 |
atatatttattacaatatataatacaacttggtctcaccagttttctcaggagtggcattttttgttttctt---agaaactggagtttttgaagcagat |
28943112 |
T |
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| Q |
122 |
tcattggaccttttctttcccttgtcaaccttcaaaa |
158 |
Q |
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| T |
28943113 |
tcattgggcctcttctttccctggtccaccttcaaaa |
28943149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 28943595 - 28943638
Alignment:
| Q |
247 |
ttcatcagaatcttcatctttctcctcctttggatcaacaacct |
290 |
Q |
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| T |
28943595 |
ttcatcagaatcttcatctttcacatcctttggatcaacaacct |
28943638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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