View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_7 (Length: 658)

Name: NF15302_low_7
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_7
NF15302_low_7
[»] chr7 (11 HSPs)
chr7 (1-552)||(18200583-18201136)
chr7 (579-646)||(18200489-18200556)
chr7 (7-61)||(26917792-26917846)
chr7 (1-68)||(27237526-27237594)
chr7 (1-68)||(23859004-23859072)
chr7 (1-68)||(7398382-7398450)
chr7 (1-68)||(17800324-17800392)
chr7 (25-68)||(47985074-47985117)
chr7 (1-58)||(12419598-12419656)
chr7 (74-140)||(12419821-12419887)
chr7 (74-132)||(38971122-38971180)
[»] chr4 (18 HSPs)
chr4 (148-414)||(30185824-30186098)
chr4 (470-552)||(30186220-30186302)
chr4 (1-68)||(15735032-15735099)
chr4 (1-62)||(27111972-27112034)
chr4 (16-124)||(29425292-29425397)
chr4 (3-68)||(36118563-36118628)
chr4 (1-61)||(51692020-51692081)
chr4 (1-60)||(36178617-36178677)
chr4 (15-61)||(2135436-2135482)
chr4 (74-140)||(30507310-30507376)
chr4 (15-68)||(37746839-37746892)
chr4 (1-68)||(39329495-39329563)
chr4 (579-618)||(30186330-30186369)
chr4 (74-112)||(15734831-15734869)
chr4 (74-124)||(24404218-24404268)
chr4 (74-116)||(27111769-27111811)
chr4 (22-68)||(40217166-40217212)
chr4 (23-68)||(16882497-16882542)
[»] chr8 (9 HSPs)
chr8 (74-132)||(5721437-5721495)
chr8 (1-68)||(25561610-25561678)
chr8 (1-68)||(41677278-41677345)
chr8 (15-116)||(8102799-8102898)
chr8 (74-135)||(39332570-39332631)
chr8 (84-135)||(5973367-5973418)
chr8 (15-68)||(5973224-5973277)
chr8 (1-61)||(34789966-34790027)
chr8 (1-68)||(15167519-15167585)
[»] chr3 (8 HSPs)
chr3 (74-132)||(23641459-23641517)
chr3 (74-132)||(25855304-25855362)
chr3 (1-62)||(28689465-28689526)
chr3 (1-68)||(29598042-29598109)
chr3 (9-68)||(52374592-52374651)
chr3 (15-59)||(789879-789923)
chr3 (15-61)||(8420267-8420313)
chr3 (15-68)||(49393025-49393078)
[»] chr1 (6 HSPs)
chr1 (75-140)||(39135059-39135124)
chr1 (1-62)||(26803897-26803958)
chr1 (1-62)||(39134826-39134888)
chr1 (74-137)||(6221571-6221634)
chr1 (1-69)||(38547139-38547208)
chr1 (84-140)||(17322700-17322756)
[»] chr5 (9 HSPs)
chr5 (1-68)||(34425834-34425902)
chr5 (15-68)||(15639577-15639630)
chr5 (1-68)||(14318486-14318553)
chr5 (74-124)||(41911779-41911829)
chr5 (1-62)||(11242419-11242481)
chr5 (74-116)||(26719205-26719247)
chr5 (74-116)||(26988949-26988991)
chr5 (1-61)||(2024743-2024802)
chr5 (1-41)||(10543633-10543673)
[»] chr2 (19 HSPs)
chr2 (1-64)||(21665804-21665868)
chr2 (1-68)||(24035649-24035717)
chr2 (1-68)||(11912861-11912930)
chr2 (75-140)||(11952943-11953008)
chr2 (74-135)||(28425876-28425937)
chr2 (84-124)||(22788083-22788123)
chr2 (15-62)||(29694320-29694367)
chr2 (1-68)||(10252337-10252406)
chr2 (15-68)||(13800664-13800717)
chr2 (15-68)||(37182600-37182653)
chr2 (1-68)||(11952710-11952778)
chr2 (1-64)||(16227472-16227536)
chr2 (74-134)||(21190922-21190982)
chr2 (74-134)||(30175529-30175589)
chr2 (74-134)||(45156343-45156403)
chr2 (81-140)||(21666036-21666095)
chr2 (90-135)||(7742308-7742353)
chr2 (25-61)||(9045990-9046026)
chr2 (1-68)||(12134144-12134212)
[»] chr6 (7 HSPs)
chr6 (1-62)||(2477688-2477750)
chr6 (15-68)||(30121708-30121761)
chr6 (1-55)||(4036895-4036950)
chr6 (15-68)||(20611724-20611777)
chr6 (25-68)||(17353912-17353955)
chr6 (74-116)||(2477912-2477954)
chr6 (74-135)||(4036795-4036856)
[»] scaffold0022 (2 HSPs)
scaffold0022 (15-68)||(40014-40067)
scaffold0022 (15-68)||(138074-138127)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-68)||(230963-231031)


Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 18201136 - 18200583
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaatttcattttttgaggcccatgccttggggagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  18201136 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaatttcattttttgatacccataccttggggagg 18201037  T
Q  101 cccggttccattgagcggtttgcaaaccccaaggttcggcgcccctactaaccaggcattctagttgatgggtggtgaaactattttatgttgctgcctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18201036 cccggttccattgagcggtttgcaaaccccaaggttcggcgcccctactaaccaggcattctagttgatgggtggtgaaactattttatgttgctgcctc 18200937  T
Q  201 ttttttcaaagaacaatttggttggacaatagtttcaaaattagaaaaatcttaactttataaaaaattagttcaatggtgatgagtttaaactattttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200936 ttttttcaaagaacaatttggttggacaatagtttcaaaattagaaaaatcttaactttataaaaaattagttcaatggtgatgagtttaaactattttt 18200837  T
Q  301 gtaccaaatgaactccttagtatgtgtccctcaggactggtgttcaaattcaatattggtgcaaagtgtaaactagcacaacaatagtttggcacaaaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200836 gtaccaaatgaactccttagtatgtgtccctcaggactggtgttcaaattcaatattggtgcaaagtgtaaactagcacaacaatagtttggcacaaaaa 18200737  T
Q  401 atacaaattttgaaactgtttg-nnnnnnnctgtctgtttctttcttggaattatcacatgtttctttcttgaagatattcttgttatcatgctattctc 499  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200736 atacaaattttgaaactgtttgttttttttctgtctgtttctttcttggaattatcacatgtttctttcttgaagatattcttgttatcatgctattctc 18200637  T
Q  500 actttcaaaac-tggctaccatttctacacttctttcctccaatcatgcaagtg 552  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18200636 actttcaaaacttggctaccatttctacacttctttcctccaatcatgcaagtg 18200583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 579 - 646
Target Start/End: Complemental strand, 18200556 - 18200489
Alignment:
Q  579 ctatgatttaggcttcctatttggtaggcataatgaaaagatgtagttaatatatatttttcatctct 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200556 ctatgatttaggcttcctatttggtaggcataatgaaaagatgtagttaatatatatttttcatctct 18200489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 26917792 - 26917846
Alignment:
Q  7 accctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  26917792 accctcccaaaaaacactcacctaacaccaaaagcaagaagacccaattctaata 26917846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27237526 - 27237594
Alignment:
Q  1 caaaccaccctcctaaaa-aacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||| |||||||||||||||| | |||||||| |||||||||||||||| |||||    
T  27237526 caaaccaccctcccaaaaaaacactcacctaacaccataagcaagatgacccaattctaataggcctaa 27237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23859072 - 23859004
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||| |||||||||| ||| |||||| |||||||||||||||| |||||    
T  23859072 caaaccaccctcccaaaaaaacacccacctaacaccaaatgcaagaggacccaattctaataggcctaa 23859004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7398450 - 7398382
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||  ||| |||||| |||||||||| |||||||||||||||| |||||    
T  7398450 caaaccaccctcccaaaaaaacatccacgtaacaccaaaagcaagaggacccaattctaataggcctaa 7398382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17800324 - 17800392
Alignment:
Q  1 caaaccaccctcctaa-aaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||| ||| || ||||||  |||||||||| |||||||||| |||||||||||||||| |||||    
T  17800324 caaaccaccatcccaagaaaacatccacctaacaccaaaagcaagaggacccaattctaataggcctaa 17800392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 47985074 - 47985117
Alignment:
Q  25 cacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||    
T  47985074 cacctaacacaaaaagcaagaggacctaattctaataggcctaa 47985117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12419598 - 12419656
Alignment:
Q  1 caaaccaccctcctaaaaaac-actcacctaacacaaaaagcaagacgacccaattcta 58  Q
    ||||||||||||| ||||||  || |||||||||| |||||||||| ||||||||||||    
T  12419598 caaaccaccctcccaaaaaaatacacacctaacaccaaaagcaagaggacccaattcta 12419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 12419821 - 12419887
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    |||||| |||||||| |||||| |||||||||||||||||| |   ||||| |||||||||| ||||    
T  12419821 tttttttaggcccataccttggtgaggcccggttccattgaactccttgcagaccccaaggtccggc 12419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 38971180 - 38971122
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaa 132  Q
    |||||| ||||| || | |||||||| ||| |||||||||||||||||||| |||||||    
T  38971180 tttttttaggccaatactttggggagacccagttccattgagcggtttgcacaccccaa 38971122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 148 - 414
Target Start/End: Original strand, 30185824 - 30186098
Alignment:
Q  148 ctaaccaggcattctagttgatgggtggtgaaac-tattttatgttgctg----cctcttttttcaaag--aacaatttggttggacaatagtttcaaaa 240  Q
    |||||||||||| ||||||| |||||| ||||   |||||| ||||||||    ||||||||||||  |  |||||||| |||||||||||||||||||     
T  30185824 ctaaccaggcatgctagttggtgggtgatgaactatattttgtgttgctggctgcctcttttttcactgtgaacaatttagttggacaatagtttcaaag 30185923  T
Q  241 ttagaaaaatcttaactttataaaaaattagttcaatggtgatgagtttaaactatttttgtaccaaatgaactccttagtatgtgtccctcaggactgg 340  Q
    |||||||| ||| ||||| |||||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||| |||  |||||||    
T  30185924 ttagaaaattctaaacttcataaaaaattagttctgtggtgatgaatttaaactatttttgtactaaatgaactccttagtatgtgtgccttgggactgg 30186023  T
Q  341 tgttcaaattcaatattggtgcaaagtgtaaactagcacaacaatagtttggcacaa-aaaatacaaattttgaa 414  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| ||||| | |||| ||||  |||||||||||    
T  30186024 tgttcaaattcagtattggtgcaaagtgtaaactagcataacaaaagttttgtacaataaaacgcaaattttgaa 30186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 470 - 552
Target Start/End: Original strand, 30186220 - 30186302
Alignment:
Q  470 tgaagatattcttgttatcatgctattctcactttcaaaactggctaccatttctacacttctttcctccaatcatgcaagtg 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  30186220 tgaagatattcttgttatcatgctattctcactttcaaaactggctaccatttctacacttcttacctctaatcatgtaagtg 30186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15735099 - 15735032
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| ||||||||  |||||||||| |||||||||| ||||||||||||| || |||||    
T  15735099 caaaccaccctccaaaaaaacatccacctaacaccaaaagcaagaagacccaattctaacaggcctaa 15735032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27112034 - 27111972
Alignment:
Q  1 caaaccaccctccta-aaaaacactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  27112034 caaaccaccctcccagaaaaacacccacctaacacaaaaagcaagaggactcaattctaatag 27111972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 29425292 - 29425397
Alignment:
Q  16 aaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaatttcattttttgaggcccatgccttggggaggcccggttccattgag 115  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||| ||   |||  |||||| |||| ||| | || || ||| |||||| |||||||    
T  29425292 aaaaacactcacctaacacaaaaagtaagataacccaattctaataggcc---ttttttttttttaggctcatactttaggaaggtccggtttcattgag 29425388  T
Q  116 cggtttgca 124  Q
    |||||||||    
T  29425389 cggtttgca 29425397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 36118563 - 36118628
Alignment:
Q  3 aaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||| | ||||||||  |||||||||| |||||||||| |||||||||||||||| |||||    
T  36118563 aaccacccttcaaaaaaacatccacctaacaccaaaagcaagatgacccaattctaataggcctaa 36118628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 51692020 - 51692081
Alignment:
Q  1 caaaccaccctcctaaaa-aacactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||| || ||||||||||||    
T  51692020 caaaccaccctccgaaaaaaacactcacctaacactaaaagcaagatgatccaattctaata 51692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36178677 - 36178617
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaat 60  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||| ||||| ||||||||    
T  36178677 caaaccaccctcccaaaaaaacactcacctaacaccaaaagcaagaggacccgattctaat 36178617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 2135436 - 2135482
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||    
T  2135436 aaaaaacactgacctaacaccaaaagcaagaggacccaattctaata 2135482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 30507310 - 30507376
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    |||||| ||| |||| ||||||||||||||  |||||||||| |||||||| |||||||||| ||||    
T  30507310 tttttttaggtccattccttggggaggcccaattccattgagtggtttgcacaccccaaggtccggc 30507376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 37746839 - 37746892
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||| | |||||||||| |||||||||| |||||||||||||||| |||||    
T  37746839 aaaaaacgcccacctaacaccaaaagcaagatgacccaattctaataggcctaa 37746892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39329495 - 39329563
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||| ||| |||||| |||||||||| |||| ||||||||||| |||||    
T  39329495 caaaccaccctcccaaaaaaacacccacataacaccaaaagcaagaagaccaaattctaataggcctaa 39329563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 30186330 - 30186369
Alignment:
Q  579 ctatgatttaggcttcctatttggtaggcataatgaaaag 618  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  30186330 ctatgctttaggctgcctatttggtaggcataatgaaaag 30186369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 15734869 - 15734831
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccatt 112  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  15734869 ttttttgaggcccataccttggggaggtccggttccatt 15734831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 24404268 - 24404218
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgca 124  Q
    |||| |||||||||| |||||||||||||| | |||||||||| |||||||    
T  24404268 ttttatgaggcccataccttggggaggcccagctccattgagctgtttgca 24404218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 27111811 - 27111769
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagc 116  Q
    |||||| || |||||||||||||||||||||||| ||||||||    
T  27111811 tttttttagacccatgccttggggaggcccggttgcattgagc 27111769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 40217212 - 40217166
Alignment:
Q  22 actcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||||    
T  40217212 actcacctaacaccaaaagcaaaatgacccaattctaataggcctaa 40217166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 16882497 - 16882542
Alignment:
Q  23 ctcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||||    
T  16882497 ctcacctaacaccaaaagcaagaggacctaattctaataggcctaa 16882542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 5721495 - 5721437
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaa 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  5721495 ttttttgaggcccatgccttggggaggcccagttccattgagcggtttgcacaccccaa 5721437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25561610 - 25561678
Alignment:
Q  1 caaaccaccct-cctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25561610 caaaccacccttccaaaaaaacactcacctaacaccaaaagcaagaggacccaattctaataggcctaa 25561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41677278 - 41677345
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||| ||||| |||||||||| |||||    
T  41677278 caaaccaccctccaaaaaaacacccacctaacaccaaaagcaagaggacccgattctaataggcctaa 41677345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 8102898 - 8102799
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaatttcattttttgaggcccatgccttggggaggcccggttccattga 114  Q
    ||||||||  |||||||||| |||||||||| |||||||||||||||| ||||||||  |||||||||| | || | |||||||| ||| |||| |||||    
T  8102898 aaaaaacatccacctaacaccaaaagcaagaggacccaattctaataggcctaattt--ttttttgaggtcgatacattggggagacccagttctattga 8102801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 39332570 - 39332631
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggt 135  Q
    |||| |||||||||||||||||||| | || |||||||||||||||||||| | ||||||||    
T  39332570 ttttatgaggcccatgccttggggatgtccagttccattgagcggtttgcacatcccaaggt 39332631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 5973367 - 5973418
Alignment:
Q  84 cccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggt 135  Q
    ||||| |||||||||||||| | |||||||||||||||||| ||||||||||    
T  5973367 cccataccttggggaggcccagctccattgagcggtttgcagaccccaaggt 5973418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 5973224 - 5973277
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||||| | ||||||||| |||||||||| || |||||||||||||||||||    
T  5973224 aaaaaacattgacctaacaccaaaagcaagatgatccaattctaatagacctaa 5973277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34789966 - 34790027
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||||| |||||||||| ||| |||||||||| ||||| |||| |||||||||||||||    
T  34789966 caaaccaccatcctaaaaaaacacccacctaacaccaaaagtaagatgacccaattctaata 34790027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 15167519 - 15167585
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||| | |||||| || |||||||||| ||||| |||| |||||||||||||||| |||||    
T  15167519 caaaccacccttccaaaaaa-acccacctaacaccaaaagtaagaggacccaattctaataggcctaa 15167585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 23641459 - 23641517
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaa 132  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23641459 ttttttgaggcccataccttggggaggcccggttccattgagcggtttgcacaccccaa 23641517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 25855362 - 25855304
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaa 132  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||||||| |||||||    
T  25855362 ttttttgaggcccataccttggggaggcccagttctattgggcggtttgcacaccccaa 25855304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28689465 - 28689526
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||| ||||||| ||||||||| |||||||||| |||||||||| || |||||||||||||    
T  28689465 caaactaccctcccaaaaaacacccacctaacaccaaaagcaagatgatccaattctaatag 28689526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29598109 - 29598042
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||| ||||| ||||||||  |||||||||| |||||||||| |||| ||||||||||| |||||    
T  29598109 caaaccagcctccaaaaaaacatccacctaacaccaaaagcaagatgacctaattctaataggcctaa 29598042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 52374651 - 52374592
Alignment:
Q  9 cctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||| ||||||||| |||||||||| |||||||||| ||| |||||||||||| |||||    
T  52374651 cctcccaaaaaacacccacctaacaccaaaagcaagaggactcaattctaataggcctaa 52374592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 789923 - 789879
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaa 59  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  789923 aaaaaacactcatctaacacaaaaagtaagaggacccaattctaa 789879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 8420313 - 8420267
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||||| |||||||||| ||||||||||  ||||||||||||||    
T  8420313 aaaaaacacccacctaacaccaaaagcaagagaacccaattctaata 8420267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 49393078 - 49393025
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| |||||    
T  49393078 aaaaaatactcacctaacaccaaaagtaagaggacctaattctaataggcctaa 49393025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 39135059 - 39135124
Alignment:
Q  75 tttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    |||||||||||||| |||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  39135059 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggc 39135124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26803958 - 26803897
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||  || ||||||||||||    
T  26803958 caaaccaccctcccaaaaaacactcacctaacaccaaaagcaagataactcaattctaatag 26803897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39134826 - 39134888
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||||||    
T  39134826 caaaccaccctcccaaaaaaacacccacctaacaccaaaagcaagaggacccaattctaatag 39134888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 6221634 - 6221571
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttc 137  Q
    |||||||||||||||||||||| ||| ||| |||| |||||||| |||||| |||| |||||||    
T  6221634 ttttttgaggcccatgccttggagagacccagttctattgagcgatttgcacaccctaaggttc 6221571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38547139 - 38547208
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaat 69  Q
    ||||||||||||| |||||| ||| |||||||||| ||||| |||| |||| ||||||||||| ||||||    
T  38547139 caaaccaccctcccaaaaaaacacccacctaacactaaaagtaagaggaccaaattctaataggcctaat 38547208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 17322700 - 17322756
Alignment:
Q  84 cccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    ||||| |||||||||| ||| |||||||||||||||||||| |||| ||||| ||||    
T  17322700 cccataccttggggagaccccgttccattgagcggtttgcacaccctaaggtccggc 17322756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34425902 - 34425834
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  34425902 caaaccaccctcccaaaaaaacactcacctaacaccaaaagcaagaggactcaattctaataggcctaa 34425834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 15639630 - 15639577
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||| |||||    
T  15639630 aaaaaacactcacctaacaccaaaagtaagaggacccaattctaataggcctaa 15639577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14318486 - 14318553
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| ||||||||| ||||||| || |||||||||| |||||| || |||||| |||||    
T  14318486 caaaccaccctccaaaaaaacacccacctaagaccaaaagcaagaggacccagttttaataggcctaa 14318553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 41911779 - 41911829
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgca 124  Q
    |||| |||||||||||||||||||||| || |||||| |||||||||||||    
T  41911779 ttttatgaggcccatgccttggggaggtccagttccaatgagcggtttgca 41911829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11242419 - 11242481
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||||||| |||||| ||| |  ||||||| |||||||||| ||||||||||||||||    
T  11242419 caaaccaccctcccaaaaaaacacccctctaacaccaaaagcaagaggacccaattctaatag 11242481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 26719205 - 26719247
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagc 116  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||    
T  26719205 ttttttgaggcccattccttggggaagcccggttcctttgagc 26719247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 26988949 - 26988991
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagc 116  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||    
T  26988949 ttttttgaggcccattccttggggaagcccggttcctttgagc 26988991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2024743 - 2024802
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||| ||||| |||||| || |||||||||| |||||||||| ||| |||||||||||    
T  2024743 caaaccatcctcccaaaaaa-acacacctaacaccaaaagcaagaggactcaattctaata 2024802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10543673 - 10543633
Alignment:
Q  1 caaaccaccctcctaaaaaacactcacctaacacaaaaagc 41  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  10543673 caaaccaccctcccaaaaaacactcacccaacaccaaaagc 10543633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21665804 - 21665868
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagac 64  Q
    |||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||||||||||||||    
T  21665804 caaaccaccctcctaaaaaaacacccacctaacacctaaagcaagaggacccaattctaatagac 21665868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24035649 - 24035717
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  24035649 caaaccaccctcccaaaaaaacacccacctaacactaaaagcaagaggacctaattctaatagacctaa 24035717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11912861 - 11912930
Alignment:
Q  1 caaaccaccctcctaaaa--aacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| ||||  |||||||||||||||| |||| ||||| |||||||||||||||| |||||    
T  11912861 caaaccaccctcccaaaaaaaacactcacctaacaccaaaatcaagatgacccaattctaataggcctaa 11912930  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 11952943 - 11953008
Alignment:
Q  75 tttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    |||||||||| ||| |||||||||||||| ||||||||||||   ||||| |||||||||||||||    
T  11952943 tttttgaggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggttcggc 11953008  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 28425876 - 28425937
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggt 135  Q
    ||||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||    
T  28425876 ttttttgaggcccataccttggggtggtccagttccattgagtggtttgcacaccccaaggt 28425937  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 22788083 - 22788123
Alignment:
Q  84 cccatgccttggggaggcccggttccattgagcggtttgca 124  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  22788083 cccatgccttggggaggcccggttctattgagcggtttgca 22788123  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 29694367 - 29694320
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  29694367 aaaaaacacccacctaacaccaaaagcaagaggacccaattctaatag 29694320  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10252406 - 10252337
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaa-cacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||| ||||||| ||| |||||||||| |||||||||||||||| |||||    
T  10252406 caaaccaccctccaaaaaaaacacccacctaaacaccaaaagcaagatgacccaattctaataggcctaa 10252337  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 13800664 - 13800717
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||| |||||||||| |||||||||| || ||||||||||||| |||||    
T  13800664 aaaaaacacacacctaacaccaaaagcaagaagatccaattctaataggcctaa 13800717  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 37182653 - 37182600
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||| |||||||||  |||||||||| |||||||||||||||| |||||    
T  37182653 aaaaaacacccacctaacagcaaaagcaagatgacccaattctaataggcctaa 37182600  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11952710 - 11952778
Alignment:
Q  1 caaaccaccctcctaaaa-aacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||| ||||||||||||||||  ||| ||||| ||| |||||||||||| |||||    
T  11952710 caaaccaccctcccaaaaaaacactcacctaacacctaaaacaagaggactcaattctaataggcctaa 11952778  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16227472 - 16227536
Alignment:
Q  1 caaaccaccctcctaaaaaac-actcacctaacacaaaaagcaagacgacccaattctaatagac 64  Q
    ||||||||||||| ||||||| || |||||||||| ||||| |||| ||| ||||||||||||||    
T  16227472 caaaccaccctcccaaaaaaccacccacctaacaccaaaagtaagatgactcaattctaatagac 16227536  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 21190922 - 21190982
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaagg 134  Q
    |||| |||||||||| |||||||||||||| | |||||||||| |||||||  ||||||||    
T  21190922 ttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 21190982  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 30175589 - 30175529
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaagg 134  Q
    |||| |||||||||| |||||||||||||| | |||||||||| |||||||  ||||||||    
T  30175589 ttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 30175529  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 45156343 - 45156403
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaagg 134  Q
    |||| |||||||||| |||||||||||||| | |||||||||| |||||||  ||||||||    
T  45156343 ttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 45156403  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 21666036 - 21666095
Alignment:
Q  81 aggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 140  Q
    |||||||| |||||||||||||| ||||||||||||   ||||| |||||||||| ||||    
T  21666036 aggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccggc 21666095  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 7742308 - 7742353
Alignment:
Q  90 ccttggggaggcccggttccattgagcggtttgcaaaccccaaggt 135  Q
    ||||||| ||||||||||| ||||||||||||||| || |||||||    
T  7742308 ccttgggaaggcccggttctattgagcggtttgcacactccaaggt 7742353  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 9046026 - 9045990
Alignment:
Q  25 cacctaacacaaaaagcaagacgacccaattctaata 61  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  9046026 cacctaacacaaaaagcaagaggacctaattctaata 9045990  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12134144 - 12134212
Alignment:
Q  1 caaaccaccctccta-aaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| | |||||||  |||||||||| ||||||||||  || |||||||||||| |||||    
T  12134144 caaaccaccctcccacaaaaacatacacctaacaccaaaagcaagagaactcaattctaataggcctaa 12134212  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2477688 - 2477750
Alignment:
Q  1 caaaccaccctccta-aaaaacactcacctaacacaaaaagcaagacgacccaattctaatag 62  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  2477688 caaaccaccctcccagaaaaacacccacctaacacaaaaagcaagaggactcaattctaatag 2477750  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 30121761 - 30121708
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  30121761 aaaaaacactcacttaacaccaaaagcaagaggacccgattctaatagacctaa 30121708  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4036950 - 4036895
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaatt 55  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||    
T  4036950 caaaccaccctccaaaaaaaacactcacctaacaccaaaagcaagatgacccaatt 4036895  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 20611777 - 20611724
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||||||||||||||||| ||||| || | |||||||||||||||| |||||    
T  20611777 aaaaaacactcacctaacaccaaaagtaaaatgacccaattctaataggcctaa 20611724  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 17353955 - 17353912
Alignment:
Q  25 cacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    |||||||||| |||||||||| |||| |||||||||||||||||    
T  17353955 cacctaacaccaaaagcaagaggacctaattctaatagacctaa 17353912  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 2477912 - 2477954
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagc 116  Q
    |||||| || |||||||||||||||||||||||| ||||||||    
T  2477912 tttttttagacccatgccttggggaggcccggttgcattgagc 2477954  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 4036856 - 4036795
Alignment:
Q  74 ttttttgaggcccatgccttggggaggcccggttccattgagcggtttgcaaaccccaaggt 135  Q
    ||||||||||| ||| | ||||||||||||   ||||||||||| |||||| ||||||||||    
T  4036856 ttttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggt 4036795  T

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Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 40067 - 40014
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||| |||||    
T  40067 aaaaaacatccacctaacacaaaaagcaagaggacccaattctaataggcctaa 40014  T

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Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 138127 - 138074
Alignment:
Q  15 aaaaaacactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||| |||||    
T  138127 aaaaaacatccacctaacacaaaaagcaagaggacccaattctaataggcctaa 138074  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 230963 - 231031
Alignment:
Q  1 caaaccaccctcctaaaaaa-cactcacctaacacaaaaagcaagacgacccaattctaatagacctaa 68  Q
    ||||||||||||| |||||| ||| |||||||||| |||||||||| ||||| |||||||||| |||||    
T  230963 caaaccaccctcccaaaaaaccacccacctaacaccaaaagcaagaggacccgattctaataggcctaa 231031  T

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