View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_71 (Length: 285)
Name: NF15302_low_71
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 43222807 - 43223067
Alignment:
| Q |
9 |
taccaaggtaaaggaacaatagtttatgatctcatagctcatgggagaagcgtaatgttgtcccaataattttcaatagtaagtgagacctaaagtaagt |
108 |
Q |
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| T |
43222807 |
taccaaggtaaaggaacaatagtttatgatctcatagctcatgggagaagcgtaatgttgtcccaataattttcaatagtaagtgagacctaaagtaagt |
43222906 |
T |
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| Q |
109 |
tttaccgtatgcagtcnnnnnnngtccgcatataatgtcttttttcttataaaacttaatgaaaaatatcttttgttggtagaccctaggtttattagcc |
208 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222907 |
tttaccgtatgcagtctttttttgtccgcatataatgtc-tttttcttataaaacttaatgaaaaatatcttttgttggtagaccctaggtttattagcc |
43223005 |
T |
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| Q |
209 |
gtaacccttgtgccggccctagagaaggctaacaccaaatttcactttcttggcaatcaagt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43223006 |
ataacccttgtgccggccctagagaaggctaacaccaaatttcactttcttggtaatcaagt |
43223067 |
T |
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