View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_72 (Length: 284)

Name: NF15302_low_72
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_72
NF15302_low_72
[»] chr2 (5 HSPs)
chr2 (25-130)||(22144386-22144491)
chr2 (33-130)||(37458544-37458641)
chr2 (25-106)||(37458027-37458108)
chr2 (58-106)||(27561661-27561709)
chr2 (58-86)||(27561616-27561644)
[»] chr3 (1 HSPs)
chr3 (25-130)||(38509955-38510060)
[»] chr4 (8 HSPs)
chr4 (192-284)||(5194634-5194726)
chr4 (188-267)||(4843578-4843657)
chr4 (190-267)||(5172022-5172099)
chr4 (48-120)||(7120784-7120856)
chr4 (58-106)||(5742193-5742241)
chr4 (138-179)||(4843502-4843543)
chr4 (241-272)||(5194739-5194770)
chr4 (58-86)||(5742258-5742286)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 22144491 - 22144386
Alignment:
Q  25 ttttttaattttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatgttga 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22144491 ttttttaattttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatgttga 22144392  T
Q  125 aacaac 130  Q
    ||||||    
T  22144391 aacaac 22144386  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 37458544 - 37458641
Alignment:
Q  33 ttttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatgttgaaacaac 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37458544 ttttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttaatgttccattccagatgttgaaacaac 37458641  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 37458027 - 37458108
Alignment:
Q  25 ttttttaattttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  37458027 ttttttaattttgatgtctaatattatcatggccaatgctttttattctatagctaatttggttctagattttcagttgatg 37458108  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 27561661 - 27561709
Alignment:
Q  58 caatgctttttattctatagctgatttggttctagattttcacttgatg 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27561661 caatgctttttattctatagctgatttggttctagagtttcacttgatg 27561709  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 27561616 - 27561644
Alignment:
Q  58 caatgctttttattctatagctgatttgg 86  Q
    |||||||||||||||||||||||||||||    
T  27561616 caatgctttttattctatagctgatttgg 27561644  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 38510060 - 38509955
Alignment:
Q  25 ttttttaattttgatgtctaatattatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatgttga 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38510060 ttttttaattttgatgtctaatattatcatggctaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatgttga 38509961  T
Q  125 aacaac 130  Q
    ||||||    
T  38509960 aacaac 38509955  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 5194726 - 5194634
Alignment:
Q  192 agaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataatgtggattttaaattcc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  5194726 agaattattttattgaatttaattagagattgtaaactcattaacttagagtttctattgagaatatgatttataatgtggattttaaattcc 5194634  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 4843578 - 4843657
Alignment:
Q  188 acttagaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataa 267  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4843578 acttagaattattttattgaatttaattaaagattgtaaactcattaacttagagcctctattgagaatatgatttataa 4843657  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 5172099 - 5172022
Alignment:
Q  190 ttagaattattttattgaatttaattagagattgtaaactcattaacttagagcctctattgagaatatgatttataa 267  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5172099 ttagaattattttattgaatttaattaaagattgtaaactcattaacttagagcctctattgagaatatgatttataa 5172022  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 7120856 - 7120784
Alignment:
Q  48 ttatcatggccaatgctttttattctatagctgatttggttctagattttcacttgatgttccattccagatg 120  Q
    |||| ||||| |||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||    
T  7120856 ttattatggctaatgctttttattctatctctgatgtggttctagattttcacttgatattccattccagatg 7120784  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 5742241 - 5742193
Alignment:
Q  58 caatgctttttattctatagctgatttggttctagattttcacttgatg 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5742241 caatgctttttattctatagctgatttggttctagagtttcacttgatg 5742193  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 4843502 - 4843543
Alignment:
Q  138 ggagtgttcaaccactactaataatcatgagaataaatacta 179  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  4843502 ggagtgttcgaccactactaataatcatgagaagaaatacta 4843543  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 5194770 - 5194739
Alignment:
Q  241 agcctctattgagaatatgatttataatgtgg 272  Q
    ||||||||||||||||||||||||||||||||    
T  5194770 agcctctattgagaatatgatttataatgtgg 5194739  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 5742286 - 5742258
Alignment:
Q  58 caatgctttttattctatagctgatttgg 86  Q
    |||||||||||||||||||||||||||||    
T  5742286 caatgctttttattctatagctgatttgg 5742258  T

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