View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_75 (Length: 273)
Name: NF15302_low_75
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 10293591 - 10293343
Alignment:
| Q |
19 |
ccatcttcaacatactgagaaacaacagttgttgtctgtgatttaacattccattccaataatagcaattcatttagagtttctcccctcctgtaggaca |
118 |
Q |
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| T |
10293591 |
ccatcttcaacatactgagaaacaacagttgttgtctgtgatttaacattccattccaataatagcaattcatttagagtttctcccctcctgtaggaca |
10293492 |
T |
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| Q |
119 |
taggaaagaagtatgattttcggtaagcatgcatcacaacaaggacgttagaaacagaagctagtttacaagatagaat---ctcaagacttaaaataaa |
215 |
Q |
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| T |
10293491 |
taggaaagaagtatgattttcgggaagcatgcatcacaacaaggacgttagaaacagaagctagtttacaagatagaattacctcaagacttagaataaa |
10293392 |
T |
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| Q |
216 |
ctcttgacaatggtcaaatatgtgaatcatcatacctatgtagaataat |
264 |
Q |
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| T |
10293391 |
ctcttgacaatggtcaaataagtgaatcatcatacctatgtagaataat |
10293343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 43799548 - 43799608
Alignment:
| Q |
55 |
tgtgatttaacattccattccaataatagcaattcatttagagtttctcccctcctgtagg |
115 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
43799548 |
tgtgctttaacattccattccaataagagcaattcatttagaagagctcccctcctgtagg |
43799608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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