View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_78 (Length: 269)
Name: NF15302_low_78
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41819274 - 41819531
Alignment:
| Q |
1 |
tataaaagaaagagacaagagccacgcctcttaatgtaggactgaaaaatttgacaatatttaggattcatgaatacat--aagttcaaaaaaggattga |
98 |
Q |
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| T |
41819274 |
tataaaagaaagagacaagagccacgcctcttaatgtaggactgaaaaatttgacaatatttaggattcatgaatacatgtaagttcaaaaaaggattga |
41819373 |
T |
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| Q |
99 |
tgctaattaacatgagacagacaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacag |
198 |
Q |
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| T |
41819374 |
tgctaattaacatgagacagacaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacag |
41819473 |
T |
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| Q |
199 |
aagcctaactcttggttctttcctggatccagtttcacagtttcaactaggaagaaat |
256 |
Q |
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| T |
41819474 |
aagcctaactcttggttctttcctggatccagtttcacagtttcaactaggaagaaat |
41819531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 41826027 - 41826173
Alignment:
| Q |
105 |
ttaacatgagacagacaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacagaagcct |
204 |
Q |
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| T |
41826027 |
ttaacatgagacagtctacctgaagattactatttccgcagcattcctcatagatttatatcttcggctaacaacataactaactttagagcagaagcct |
41826126 |
T |
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| Q |
205 |
aactcttggttctttcctggatccagtttcacagtttcaactaggaa |
251 |
Q |
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| T |
41826127 |
aactcttggttctttctgggagctagttttacagtttcaactaggaa |
41826173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 41825881 - 41825954
Alignment:
| Q |
2 |
ataaaagaaagagacaagagccacgcctcttaatgtaggactgaaaaatttgacaatatttaggattcatgaat |
75 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| | ||| |||||||||||||||||| |
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| T |
41825881 |
ataaaagaaagagacaagagccatgcctcttaatgcaggactgaaaaacattacattatttaggattcatgaat |
41825954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 22820200 - 22820053
Alignment:
| Q |
105 |
ttaacatgagacagacaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacagaagcct |
204 |
Q |
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||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||| ||| || |||| | |
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| T |
22820200 |
ttaacatcagacagactacctgaagattactattttggcggcattcctcatagatttatatcttcggctaacaacataactaactttagagcaaaagctt |
22820101 |
T |
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| Q |
205 |
aactcttggttctttcctggatccagtttcacagtttcaactaggaagaa |
254 |
Q |
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||||| ||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
22820100 |
aactc--ggttctttctgggagctagtttcacagtttcaactaggaagaa |
22820053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 12343349 - 12343483
Alignment:
| Q |
119 |
acaacctgaagattactatttctgcggcattcctcatagatttgtatcttcggctaagaacataaataactctagtacagaagcctaactcttggttctt |
218 |
Q |
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||||| |||| |||||||||||||| |||| | | |||||||||||||||||| |||||||||||| |||||||| |||||||| ||||| || |||| | |
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| T |
12343349 |
acaacttgaaaattactatttctgcagcat-cattatagatttgtatcttcggttaagaacataaaaaactctagcacagaagcataactatttgttcat |
12343447 |
T |
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| Q |
219 |
tcctggatccagtttcacagtttcaactaggaagaa |
254 |
Q |
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| || | || ||||||||||||| || ||||||| |
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| T |
12343448 |
tgttgaagtcaatttcacagtttcagctgggaagaa |
12343483 |
T |
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