View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_83 (Length: 263)
Name: NF15302_low_83
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_83 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 26647763 - 26648021
Alignment:
| Q |
1 |
ttgcagtatttataagggaatttatcccacagttcacataaaaaatatcactagctgccaccataatctgttatatctttttgctactattgtttgtgtc |
100 |
Q |
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| T |
26647763 |
ttgcagtatttataagggaatttatcccacagttcacataaaaaatatcactagttgccatcataatttgttatatctttttgctactattgtttgtgtc |
26647862 |
T |
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| Q |
101 |
aattatttggcatttcgaactcaacctgagggagagtatgctgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaatat |
200 |
Q |
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| T |
26647863 |
aattatttggcatttcgagctcaacctgagggagagtatgctgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaat-- |
26647960 |
T |
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| Q |
201 |
aatttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgatga |
263 |
Q |
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| T |
26647961 |
--tttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgatga |
26648021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 13687139 - 13687083
Alignment:
| Q |
203 |
tttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatg |
259 |
Q |
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| T |
13687139 |
tttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatg |
13687083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 13689091 - 13689035
Alignment:
| Q |
203 |
tttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatg |
259 |
Q |
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| T |
13689091 |
tttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatg |
13689035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 22188653 - 22188703
Alignment:
| Q |
208 |
actcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaat |
258 |
Q |
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| T |
22188653 |
actcatgaaggccgttatgaatatctcgtaatgccctttgtgttaacaaat |
22188703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 37004049 - 37004144
Alignment:
| Q |
142 |
tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaatataatttgaactcatgaaggccattatgaatatctcgtaatgc |
241 |
Q |
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|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
37004049 |
tgaaattagggtatcatcagattcaaacgaaagagggtgatattcacaagactgaat----tttgaactcatgaaggacattctgaatatctcgtaatgc |
37004144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 36993754 - 36993859
Alignment:
| Q |
142 |
tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaatataatttgaactcatgaaggccattatgaatatctcgtaatgc |
241 |
Q |
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|||||||||||| ||| |||||||||| ||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
36993754 |
tgaaatcagggtgtcaccagattcgaacgaaggagggtgatattcaaaaaactgaa----atttgaactcatgaaggccattatgaatatctcaaaatgc |
36993849 |
T |
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| Q |
242 |
cctttgggtt |
251 |
Q |
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| T |
36993850 |
cctttgggtt |
36993859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 36993205 - 36993343
Alignment:
| Q |
4 |
cagtatttataagggaatttatcccacagttcacataaaaaatatcactagctgccaccataatctgttatatctttttgctactattgtttgtgtcaat |
103 |
Q |
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| T |
36993205 |
cagtctttgtaagggaattta-cccacagttaacatcaataatgtcactatttgccagcataatttgttatatccttttgttactattatttgtgtcaat |
36993303 |
T |
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| Q |
104 |
tatttggcatttcgaactcaacctgagggagagtatgctga |
144 |
Q |
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| T |
36993304 |
tatttagtatttagagctcaacctg-gggagagtatgctga |
36993343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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