View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_84 (Length: 262)
Name: NF15302_low_84
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_84 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 49919 - 49693
Alignment:
| Q |
17 |
aggacaaaaagaggacaaaactaaggccacctcaacaacatctcactgcttcaacaaatcaggtttaatctcgtttacattacacacacgcatacactac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49919 |
aggacaaaaagaggacaaaactaaggccacctcaacaacatctcactgcttcaacaaatcaggtttaatctcgtttacattacacacacgcatacactac |
49820 |
T |
|
| Q |
117 |
attttttccttatcttaggtcggttttacttacttaattataagtcattattacagggtgtgaaacatgaagatattaaaaagaaaaacgtcagtggtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49819 |
attttttccttatcttaggtcggttttacttacttaattataagtc---attacagggtgtgaaacatgaagatattaaaaagaaaaacgtcagtggtta |
49723 |
T |
|
| Q |
217 |
gtgagatcttctaatttcgtatctacattg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49722 |
gtgagatcttctaatttcgtatctacattg |
49693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University