View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_85 (Length: 258)
Name: NF15302_low_85
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 24544334 - 24544086
Alignment:
| Q |
1 |
atcgatgtaatattttattaaaatatactaaaaacattaagggaccatctccatattatcatatgtcctctggaaataatctttgatcgaatattcaagc |
100 |
Q |
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| T |
24544334 |
atcgatgtaatattttattaaaatatactaaaaacattaagggaccatctccatattatcatatgtcctctggaaataatctttgatcgaatattcaagc |
24544235 |
T |
|
| Q |
101 |
atatatatnnnnnnnnnnnnnnnnnnnnnnaacaatatttttgtttcatattgttcaaaattaacagtagtnnnnnnnnnnnnngctaaactaaatggaa |
200 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24544234 |
ataaatatagagagagaaggagagagaagaaacaatatttttgtttcatattgttcaaaattaacagtagtaaaaaaataaaaagctaaactaaatggaa |
24544135 |
T |
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| Q |
201 |
taagtgtaatgatcatctaagatagatccattagaatatacagtattat |
249 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
24544134 |
taagtgtaatgatcatctaagataggtccattagaatataccgtattat |
24544086 |
T |
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