View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_88 (Length: 253)

Name: NF15302_low_88
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_88
NF15302_low_88
[»] chr6 (3 HSPs)
chr6 (18-190)||(7581227-7581399)
chr6 (29-89)||(30522135-30522195)
chr6 (70-113)||(6978452-6978495)
[»] chr1 (2 HSPs)
chr1 (27-89)||(31578026-31578087)
chr1 (28-89)||(31767966-31768028)
[»] chr2 (1 HSPs)
chr2 (30-89)||(37267707-37267766)
[»] chr4 (2 HSPs)
chr4 (28-89)||(26989003-26989064)
chr4 (32-89)||(30441368-30441425)
[»] chr8 (1 HSPs)
chr8 (33-89)||(37507535-37507591)
[»] chr5 (3 HSPs)
chr5 (30-85)||(17223062-17223117)
chr5 (27-89)||(35323595-35323657)
chr5 (29-89)||(31859713-31859773)
[»] chr7 (1 HSPs)
chr7 (73-109)||(44453700-44453736)
[»] chr3 (1 HSPs)
chr3 (32-72)||(27717013-27717053)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 7581399 - 7581227
Alignment:
Q  18 atattgtgtaggccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaactgtataaagcgcgtgagaagctcgtgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  7581399 atattgtgtaggccattacttttcccaccttttgagcttcttaagcgtcctatttggattctaaaatccgaactgtatagagcgtgtgagaagctcgtgt 7581300  T
Q  118 aatgtgggaaaagaaacgggttattatatgttttttcttgtatgtttggtgagacaagttcaacttcaagccc 190  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7581299 aatgtgggaaaagaaacaggttattatatgttttttcttgtatgtttggtgagacaggttcaacttcaagccc 7581227  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 30522195 - 30522135
Alignment:
Q  29 gccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    |||||||||||||||||||| |||| |||||  | |||||||| |||||| ||||||||||    
T  30522195 gccattacttttcccaccttatgaggttcttgtgtgccctattcggattccaaaatccgaa 30522135  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 6978495 - 6978452
Alignment:
Q  70 tttggattctaaaatccgaactgtataaagcgcgtgagaagctc 113  Q
    |||||||||||||||||||||| |||||  ||||||||||||||    
T  6978495 tttggattctaaaatccgaactttataagacgcgtgagaagctc 6978452  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 31578087 - 31578026
Alignment:
Q  27 aggccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    ||||| ||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||    
T  31578087 aggccgttacttttcccacctat-gagcttctcgcgcgccctatttggattctaaaatccgaa 31578026  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 31768028 - 31767966
Alignment:
Q  28 ggccattacttttcccaccttt-tgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    |||||||||||||||||||  | || |||||| |||||||||||||||||| |||||||||||    
T  31768028 ggccattacttttcccacccctatgcgcttctcacgcgccctatttggattttaaaatccgaa 31767966  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 37267707 - 37267766
Alignment:
Q  30 ccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    ||||||||||| ||||||| |||||||||   | ||||||||||||||||||||||||||    
T  37267707 ccattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaa 37267766  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 26989064 - 26989003
Alignment:
Q  28 ggccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    ||||||||||||||||||| | |||| ||||| || ||||||| | ||||||||||||||||    
T  26989064 ggccattacttttcccaccctatgagtttcttgcgtgccctatctagattctaaaatccgaa 26989003  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 30441368 - 30441425
Alignment:
Q  32 attacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    ||||||||||||||| | |||||||||   || |||||||| ||||||||||||||||    
T  30441368 attacttttcccaccctatgagcttctcgtgcaccctatttagattctaaaatccgaa 30441425  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 37507535 - 37507591
Alignment:
Q  33 ttacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    |||||||||||||| | |||| ||||| ||||||||||| | |||||||||||||||    
T  37507535 ttacttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaa 37507591  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 17223062 - 17223117
Alignment:
Q  30 ccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatc 85  Q
    ||||||||||||||||||  |||| |||| ||||||| ||||| ||||||||||||    
T  17223062 ccattacttttcccacctgatgagtttctcacgcgccttatttagattctaaaatc 17223117  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 35323595 - 35323657
Alignment:
Q  27 aggccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    |||||||||||||||||||||| |||| ||||   ||| ||||||  ||||||||||||||||    
T  35323595 aggccattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaa 35323657  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 31859713 - 31859773
Alignment:
Q  29 gccattacttttcccaccttttgagcttcttacgcgccctatttggattctaaaatccgaa 89  Q
    |||||||||||| ||| ||| |||||||||   |||||||||| ||| |||||||||||||    
T  31859713 gccattacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaa 31859773  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 44453700 - 44453736
Alignment:
Q  73 ggattctaaaatccgaactgtataaagcgcgtgagaa 109  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  44453700 ggattctaaaatgcgaactgtatagagcgcgtgagaa 44453736  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 27717053 - 27717013
Alignment:
Q  32 attacttttcccaccttttgagcttcttacgcgccctattt 72  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  27717053 attacttttcccaccttatgagcttctcgcgcgccctattt 27717013  T

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