View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_93 (Length: 247)
Name: NF15302_low_93
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_93 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 53493399 - 53493645
Alignment:
| Q |
1 |
cctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgac |
100 |
Q |
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| T |
53493399 |
cctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgac |
53493498 |
T |
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| Q |
101 |
tatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaac |
200 |
Q |
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| T |
53493499 |
tatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaac |
53493598 |
T |
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| Q |
201 |
tctccattcaaaaattaagtgtagtgattgttctatcttttcatctc |
247 |
Q |
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| T |
53493599 |
tgtccattcacaaattaagtgtagtgattgttctatcttttcatctc |
53493645 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 16072560 - 16072748
Alignment:
| Q |
1 |
cctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtatt--aagtctg |
98 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || | ||||||| ||||| |
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| T |
16072560 |
cctgaagctatagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattgag---aatagtagaggtgtatttgttgtctg |
16072656 |
T |
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| Q |
99 |
actatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaat |
190 |
Q |
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| T |
16072657 |
actatctatacttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaattcttgtggttggaaagacaaat |
16072748 |
T |
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