View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_97 (Length: 246)
Name: NF15302_low_97
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_97 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41067026 - 41066781
Alignment:
| Q |
1 |
tatttcacacagattaagagaaaaactacaaagaattttattttatcaaattaaccttatcaattattagtatattcactattaccatcaatgcaaatta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067026 |
tatttcacgcagattaagagaaaaactacaaagaattttattttatcaaattaaccttatcaattattagtatattcactattaccatcaatgcaaatta |
41066927 |
T |
|
| Q |
101 |
aaatatattaacttgaaacttgagagtaatgcaaatgtaacggaatgctagttatgagacgaagtgagtatttggttaatagaatcatcaagagaaacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41066926 |
aaatatattaacttgaaacttgagagtaatgcaaatgtaacggaacgctagttatgagacgaagtgagtatttagttaatagaatcatcaagagaaacga |
41066827 |
T |
|
| Q |
201 |
acacaacatctttacttaaaattttaaggggcgaactatatgagtc |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41066826 |
acacaacatctttacttaaaactttaaggggcgaactatatgagtc |
41066781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 36789174 - 36789132
Alignment:
| Q |
40 |
attttatcaaattaaccttatcaattattagtatattcactat |
82 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
36789174 |
attttatcaaattaaccttattaataattagtgtattcactat |
36789132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 6100854 - 6100918
Alignment:
| Q |
50 |
attaaccttatcaattattagtatattcactattaccatcaatgcaaattaaaatatattaactt |
114 |
Q |
| |
|
|||||| |||||||||||| || ||||||| |||||||| |||| ||| || || |||||||||| |
|
|
| T |
6100854 |
attaactttatcaattattggtgtattcaccattaccataaatgaaaagtagaagatattaactt |
6100918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University