View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15303_low_1 (Length: 740)

Name: NF15303_low_1
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15303_low_1
NF15303_low_1
[»] chr4 (1 HSPs)
chr4 (13-721)||(31587291-31588021)


Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 13 - 721
Target Start/End: Original strand, 31587291 - 31588021
Alignment:
Q  13 attatactcatgatttaatattaatatcattacaaaaaacaaaactcatgattattatatagatgtgaatctgtgatcaatcggactcataattatgcgt 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  31587291 attatactcatgatttaatattaatatcattacaaaaa-caaaactcatgattattatatagatgtgaatctgtgatcaatcggactcatatttatgtgt 31587389  T
Q  113 atccaccaaaaacattcacatagtgataaaatgttgtatgaatgagttcgaatttaaatca---------------gtataatatatgtagaagacggag 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||    
T  31587390 atccaccaaaaacattcacatagtgataaaatgttgtatgaatgagttcgaatttaaatcaattggtaaagatgttgtataatatatgtagaagacggag 31587489  T
Q  198 ttcgaatttcgaacatcttacttattcactttacaaaggtaaatttctaaccattgaggtatttaaccaaaataaatgttgtttgaacggtatgtatgga 297  Q
    ||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31587490 ttcgaatttcgaacatcttacttattcaccttataaagatgaatttctaaccattgaagtatttaaccaaaataaatgttgtttgaacggtatgtatgga 31587589  T
Q  298 tgcatattagaacctacaatttcccatt-------agttgtcttctctnnnnnnn--tgttaagtgtaagttttgtcttt-atgttctttattaaaaaat 387  Q
    ||||| |||||| |||||||||||||||       |||||||||||||         ||||| |||||| |||||||||| |||||||||||||||||||    
T  31587590 tgcatgttagaatctacaatttcccattgatatttagttgtcttctctaaaaaaaattgttacgtgtaaattttgtcttttatgttctttattaaaaaat 31587689  T
Q  388 aaatctaccttctcaacaaaagtgaggagaatgaaaacgtttcgaaatattgaacctaggtttagtaaagttgtcaagg-agagctggcaaaacattgtt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31587690 aaatctaccttctcaacaaaagtgaggagaatgaaaacgtttcgaaatattgaacctaggtttagtaaagttgtcaagggagagctggcaaaacattgtt 31587789  T
Q  487 tatcatatcatatggcggtaccccggttagcagcatgtgcatgtgatttcagttcttgcagctaaaacaattgtaacaaattgatctattatatttatta 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||| || |    
T  31587790 tatcatatcatatggcggtaccccggttagcagcatgtgcatgtgatttgagttc--gcagctaaaacaattgtaacaaattgatctattatatt-atca 31587886  T
Q  587 aaaaataatattaccctaaatttttcatttgaaaaatattttgaagacattgacttaatgtgtttagattcgtctagtttgtatcggtatcattgaatca 686  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31587887 aaaaataatataaccctaaatttttcatttgaaaaatattttgaagacattgacttaatgtgtttagattcgtctagtttgtatcggtatcattgaatca 31587986  T
Q  687 aagatattattttctttaaagactcattgaaccaa 721  Q
    |||||||||||||||||||||| ||||||||||||    
T  31587987 aagatattattttctttaaagaatcattgaaccaa 31588021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University