View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15303_low_10 (Length: 216)

Name: NF15303_low_10
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15303_low_10
NF15303_low_10
[»] chr8 (10 HSPs)
chr8 (8-154)||(38613611-38613757)
chr8 (151-216)||(6311097-6311162)
chr8 (153-216)||(7290147-7290211)
chr8 (154-216)||(36979184-36979244)
chr8 (145-216)||(10689373-10689442)
chr8 (154-216)||(18870790-18870849)
chr8 (154-216)||(30655448-30655507)
chr8 (154-208)||(4760314-4760366)
chr8 (175-216)||(39785044-39785086)
chr8 (154-216)||(18853399-18853457)
[»] chr5 (13 HSPs)
chr5 (153-216)||(1457382-1457446)
chr5 (154-216)||(27444771-27444834)
chr5 (154-216)||(27449615-27449678)
chr5 (154-216)||(31180079-31180139)
chr5 (154-216)||(43598525-43598588)
chr5 (154-216)||(43604017-43604080)
chr5 (154-216)||(43609509-43609572)
chr5 (171-216)||(30631227-30631272)
chr5 (154-216)||(43592080-43592143)
chr5 (175-216)||(28807795-28807837)
chr5 (154-210)||(38191983-38192036)
chr5 (154-210)||(38219208-38219261)
chr5 (154-210)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (153-216)||(51520257-51520321)
chr4 (175-216)||(45348038-45348079)
chr4 (175-216)||(45357517-45357558)
chr4 (153-216)||(56146932-56146996)
chr4 (154-216)||(29760449-29760509)
chr4 (175-216)||(9224627-9224668)
chr4 (175-216)||(9229414-9229455)
chr4 (154-216)||(24741748-24741807)
chr4 (175-216)||(3813846-3813888)
chr4 (175-216)||(18855549-18855591)
chr4 (175-215)||(5732486-5732525)
[»] chr7 (9 HSPs)
chr7 (152-216)||(2057763-2057825)
chr7 (175-216)||(24024548-24024589)
chr7 (175-216)||(4866553-4866594)
chr7 (175-216)||(12396735-12396776)
chr7 (175-216)||(12406155-12406196)
chr7 (175-216)||(31109803-31109844)
chr7 (154-216)||(20357778-20357837)
chr7 (154-210)||(1533677-1533730)
chr7 (154-210)||(21645818-21645871)
[»] chr6 (9 HSPs)
chr6 (175-216)||(6438324-6438365)
chr6 (175-216)||(14737797-14737838)
chr6 (175-216)||(14742656-14742697)
chr6 (175-216)||(22010917-22010958)
chr6 (175-216)||(11856795-11856836)
chr6 (175-216)||(28155791-28155832)
chr6 (175-216)||(28184325-28184367)
chr6 (154-211)||(30126030-30126084)
chr6 (154-210)||(5675004-5675057)
[»] chr3 (5 HSPs)
chr3 (152-216)||(7167049-7167111)
chr3 (175-216)||(22173415-22173456)
chr3 (154-216)||(2671817-2671876)
chr3 (175-215)||(18656256-18656295)
chr3 (154-216)||(40373026-40373085)
[»] chr2 (8 HSPs)
chr2 (152-216)||(11099157-11099219)
chr2 (175-216)||(44312844-44312885)
chr2 (154-210)||(25403443-25403496)
chr2 (175-216)||(32246607-32246649)
chr2 (154-210)||(9296638-9296691)
chr2 (154-210)||(25398305-25398358)
chr2 (175-216)||(39812208-39812250)
chr2 (154-216)||(14291295-14291354)
[»] scaffold0135 (1 HSPs)
scaffold0135 (175-216)||(35282-35323)
[»] scaffold0355 (2 HSPs)
scaffold0355 (175-216)||(9860-9902)
scaffold0355 (175-216)||(101-143)
[»] scaffold0127 (1 HSPs)
scaffold0127 (175-216)||(34169-34211)
[»] chr1 (8 HSPs)
chr1 (175-216)||(1055232-1055274)
chr1 (175-216)||(39445322-39445364)
chr1 (175-216)||(41386571-41386613)
chr1 (154-210)||(19359079-19359132)
chr1 (154-210)||(24203001-24203054)
chr1 (175-216)||(25445310-25445352)
chr1 (175-216)||(41398060-41398102)
chr1 (175-216)||(44024093-44024135)
[»] scaffold0188 (1 HSPs)
scaffold0188 (154-210)||(24278-24331)
[»] scaffold0464 (1 HSPs)
scaffold0464 (175-215)||(185-226)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  8 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  108 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 154  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 6311097 - 6311162
Alignment:
Q  151 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 6311162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 7290211 - 7290147
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagata 7290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 36979184 - 36979244
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 36979244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 10689442 - 10689373
Alignment:
Q  145 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||| || ||||||| || |||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 10689373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 18870849 - 18870790
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagata 18870790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 30655448 - 30655507
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||    
T  30655448 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagata 30655507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 4760366 - 4760314
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagc 208  Q
    |||||||| ||||||||||||||||| |||||||  |||||| ||||||||||||    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaa--aaacaaagatgtgtggagc 4760314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 39785086 - 39785044
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgata 39785044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 18853457 - 18853399
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||||||||||||||||| |    |||||| ||||||||||||||| ||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacg----aaacaaagatgtgtggagcaagagata 18853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 1457446 - 1457382
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagata 1457382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 27444771 - 27444834
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagata 27444834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 27449615 - 27449678
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagata 27449678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 31180079 - 31180139
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagata 31180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 43598525 - 43598588
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagata 43598588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 43604017 - 43604080
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagata 43604080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 43609509 - 43609572
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagata 43609572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 30631227 - 30631272
Alignment:
Q  171 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagata 30631272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 43592080 - 43592143
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagata 43592143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28807837 - 28807795
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 28807795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 38191983 - 38192036
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 38192036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 38219208 - 38219261
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 38219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 51520257 - 51520321
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagata 51520321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 45348079 - 45348038
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 45348038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 45357558 - 45357517
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 45357517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 56146996 - 56146932
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagata 56146932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 29760449 - 29760509
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 29760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 9224668 - 9224627
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 9224627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 9229455 - 9229414
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 9229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 24741748 - 24741807
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||    
T  24741748 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagata 24741807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 3813846 - 3813888
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 3813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 18855549 - 18855591
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 18855591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 5732486 - 5732525
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat 215  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgat 5732525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 2057763 - 2057825
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 2057825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 24024589 - 24024548
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 24024548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 4866553 - 4866594
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 4866594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 12396735 - 12396776
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 12396776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 12406155 - 12406196
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 12406196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 31109844 - 31109803
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgata 31109803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 20357837 - 20357778
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||    
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagata 20357778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 1533730 - 1533677
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  1533730 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 1533677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 21645818 - 21645871
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 21645871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 6438324 - 6438365
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 6438365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 14737838 - 14737797
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 14737797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 14742697 - 14742656
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 14742656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 22010958 - 22010917
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 22010917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 11856795 - 11856836
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 11856836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28155832 - 28155791
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgata 28155791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 28184325 - 28184367
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 28184367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 30126084 - 30126030
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaag 211  Q
    |||||||| ||||||||||| ||||||||||||   |||||| |||||||||||||||    
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaag 30126030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 5675057 - 5675004
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 5675004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 7167049 - 7167111
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 7167111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 22173456 - 22173415
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 22173415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 2671876 - 2671817
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||| ||||    
T  2671876 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaagagata 2671817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 18656256 - 18656295
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat 215  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgat 18656295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 40373085 - 40373026
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagata 40373026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 11099219 - 11099157
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagata 11099157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 44312885 - 44312844
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 44312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25403443 - 25403496
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 25403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 32246607 - 32246649
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 32246649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 9296691 - 9296638
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 9296638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25398305 - 25398358
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 25398358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 39812250 - 39812208
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgata 39812208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 14291295 - 14291354
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||    
T  14291295 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagata 14291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 35323 - 35282
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagata 35282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 9902 - 9860
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 9860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 143 - 101
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtgata 101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 34211 - 34169
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 34169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 1055274 - 1055232
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 1055232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 39445322 - 39445364
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 39445364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 41386571 - 41386613
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgata 41386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 24203054 - 24203001
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 24203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 25445352 - 25445310
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgata 25445310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 41398060 - 41398102
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgata 41398102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 44024135 - 44024093
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgata 216  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgata 44024093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 24331 - 24278
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 24278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 185 - 226
Alignment:
Q  175 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat 215  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgat 226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University