View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15303_low_2 (Length: 490)
Name: NF15303_low_2
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 32605111 - 32605195
Alignment:
| Q |
18 |
attacacacacttggtaaaaatggagtagaacattagaaaggcgccaatttctgctgagaacatttttacactcatacaaggttt |
102 |
Q |
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| T |
32605111 |
attacacacacttggtaaaaatggagtagaaaattagaatggcgtcaatttctgccgagaacacttttacactcatacaaggttt |
32605195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 32593297 - 32593349
Alignment:
| Q |
421 |
ttgttgagccttgagacctatccctgaaacccaactcacctaaaacttttatt |
473 |
Q |
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| T |
32593297 |
ttgttgggccttgagacctatccctgaaactcaactcacctaaaacttttatt |
32593349 |
T |
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Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 465
Target Start/End: Original strand, 19943863 - 19944010
Alignment:
| Q |
319 |
aaaaaagaggggttattttccacataaa-taagaggatataaaatgaaattaatcaacgattgctggttcaattgataaatcataatatgtaggtaactt |
417 |
Q |
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| T |
19943863 |
aaaaaagaggggttattttccacataaaataagaggagaaaaaatgcaattaatcgataaatgttggctcaattgacaaatcataatttgtaggtaattt |
19943962 |
T |
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| Q |
418 |
agcttgttgagccttgagacctatccctgaaacccaactcacctaaaa |
465 |
Q |
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| T |
19943963 |
agctcgttaaaccttgagacatatccttgaaacccaacttatctaaaa |
19944010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 34402491 - 34402429
Alignment:
| Q |
204 |
tgaagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtgaaactcgaa |
266 |
Q |
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| T |
34402491 |
tgaagcaatgcaatttaagaggaagtaaaatccatctaatccttgaaaccagtcaaattcgaa |
34402429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 437720 - 437658
Alignment:
| Q |
207 |
agcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtgaaactcgaagac |
269 |
Q |
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| T |
437720 |
agcaatgcaatttaggaggaaggaaaatagatctcatccttgaaccgagtgaaactcggagac |
437658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 13534482 - 13534436
Alignment:
| Q |
206 |
aagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacc |
252 |
Q |
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| T |
13534482 |
aagcaatgcaatttaggaggaagggaaatccatcttatccttgaacc |
13534436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 13555749 - 13555686
Alignment:
| Q |
206 |
aagcaatgcaatttaagaggaaggaaaatccatctcatccttgaacccagtgaaactcgaagac |
269 |
Q |
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| T |
13555749 |
aagcaatacaatttaggaggaaggaaaatccatcttatcctagaaccgagccaaactcggagac |
13555686 |
T |
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