View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15303_low_3 (Length: 435)
Name: NF15303_low_3
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 27760209 - 27760534
Alignment:
| Q |
23 |
cgatcttattcctggaagtaaaacttcattacttgaagaagcatttaatcggaacttactcgctacatttcttctggtaaacaatataatcctcggctat |
122 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
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| T |
27760209 |
cgatcttattcctggaagtaaaacttcagtacttgaagaagcatttaatcggaacttactcgctacatttcttctggtaaacaatatattcctcgacgat |
27760308 |
T |
|
| Q |
123 |
aattatatatgccttctctatcttgatttcattttacaatttcctctaacaattttatgcaggcaaatctcctcacagggttggtaaacttgtcggttga |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
27760309 |
tattatatatgccttctctatcttgatttcattttataatttcct-taataattttatgcaggcaaatcttctcactgggttggtaaacttgtctgttga |
27760407 |
T |
|
| Q |
223 |
taccctgtccgcttcatcgaccacatctgtttttatcttgcttgtttatgcttatattttatcaactgtgattggaattgctgattattttggtataaag |
322 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27760408 |
taccctgtctgcttcatcgaccacatctgtttttatcttgcttgtctatgcttatattttatcaactgtgattggaattgctgattattttgatataaag |
27760507 |
T |
|
| Q |
323 |
ttaaaattttggtgaagaagctatttg |
349 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
27760508 |
ttaaaattttggtgaagaagctatttg |
27760534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 162 - 349
Target Start/End: Original strand, 45314422 - 45314609
Alignment:
| Q |
162 |
tttcctctaacaattttatgcaggcaaatctcctcacagggttggtaaacttgtcggttgataccctgtccgcttcatcgaccacatctgtttttatctt |
261 |
Q |
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| T |
45314422 |
tttcctctaacaattttatgcaggcaaatctcctcacagggttggtaaacttgtcgattgataccctgtccgcttcatcgaccatatctgtttttatcgt |
45314521 |
T |
|
| Q |
262 |
gcttgtttatgcttatattttatcaactgtgattggaattgctgattattttggtataaagttaaaattttggtgaagaagctatttg |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45314522 |
gcttgtttatgcttatattttatcaactgtgattggaattgctgattattttggtataaagttaaaattttggtgaagaagctatttg |
45314609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 45314309 - 45314423
Alignment:
| Q |
23 |
cgatcttattcctggaagtaaaacttcattacttgaagaagcatttaatcggaacttactcgctacatttcttctggtaaacaatataatcctcggctat |
122 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45314309 |
cgatcttattcctggaagtaaaactacagtacttgaagaagcatttaatcggaacttactcgctacatttcttgtggtaaacaatataatcctcggctat |
45314408 |
T |
|
| Q |
123 |
aattatatatgcctt |
137 |
Q |
| |
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|||||||||||||| |
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|
| T |
45314409 |
tattatatatgcctt |
45314423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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