View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15303_low_4 (Length: 373)
Name: NF15303_low_4
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 8615550 - 8615206
Alignment:
| Q |
18 |
catgtctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcaactttttcacctcacctaccacctcttaactggt |
117 |
Q |
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| T |
8615550 |
catgtctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcatctttttcacctcacctaccacctcttaactggt |
8615451 |
T |
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| Q |
118 |
cttcttccattgattgttgcagttgggaaggtataacttgtgatcaaaataatcaccatgttacacatcttttcttaccttctagaggactcactggttt |
217 |
Q |
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| T |
8615450 |
cttcttccattgattgttgcagttgggaaggtataacttgtgatcaaaataatcaccatgttacacatcttttcttaccttctagaggactcactggttt |
8615351 |
T |
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| Q |
218 |
catttcattttctcttttaacttcccttgaatctctttctcatcttaatctttcacataatagattttatggtaatcttcaaaatcacttttttgatctt |
317 |
Q |
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| T |
8615350 |
catttcattttctcttttaacttcccttgaatctctttctcatcttaatctttcacataatagattttatggtaatcttcaaaatcacttttttgatctt |
8615251 |
T |
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| Q |
318 |
cttaatcatcttttagtccttgatttgagttataatcacttctct |
362 |
Q |
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| T |
8615250 |
cttaatcatcttttagtccttgatttgagttataatcacttctct |
8615206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 38982924 - 38982852
Alignment:
| Q |
22 |
tctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcaactttttcacctc |
96 |
Q |
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||||||||||| |||| |||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| |
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| T |
38982924 |
tctcttcttctagtaatgaacttgacaaagattcactcttatctctctcttaaaa--tctcaactttttcacctc |
38982852 |
T |
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