View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15303_low_5 (Length: 345)
Name: NF15303_low_5
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 47832449 - 47832757
Alignment:
| Q |
20 |
attgctattattcggccggtgtgtttcaacaaaaaccattacaattgtttcatattaaaatcattccgtaattggttgttgcaatggtcattacggttat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832449 |
attgctattattcggccggtgtgtttcaacaaaaaccatttcaattgtttcatattaaaatcattccgtaattggttgttgcaatggtcattacggttat |
47832548 |
T |
|
| Q |
120 |
ttaactttggtttgtgcattcataacactttgaggttaaaattagattagaaaataagatagcgggagatctattttgatgttaagagaattaagtgggc |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832549 |
ttaactttggtttgtgcattcataacattttgaggttaaaattagattagaaaataagatagcgggagatctattttgatgttaagagaattaagtgggc |
47832648 |
T |
|
| Q |
220 |
gagttggttcaaatttaatataagaggagtagaaaataagacagcacacaagttagtcccaaattaagagaaggattatgaaataaaagaatgaagtggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47832649 |
gagttggttcaaatttaatataagaggagtagaaaataagacagcacacaagttagtcccaaattaagagaaggattatgaaataaaagaatgaagcggt |
47832748 |
T |
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| Q |
320 |
cgagttagt |
328 |
Q |
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||| ||||| |
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| T |
47832749 |
cgaattagt |
47832757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 2536025 - 2535893
Alignment:
| Q |
20 |
attgctattattcggccggtgtgtttcaacaaaaaccattacaattgtttcatatt-aaaatcattccgtaattggttgttgcaatggtcattacggtta |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||| |||||| |||| |
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| T |
2536025 |
attgctattattcggctagtgtgtttcaacaaaaaccattacaatcgtttcatattaaaaatcattccataattggttgctgcaatgttcattatagtta |
2535926 |
T |
|
| Q |
119 |
tttaactttggtttgtgcattcataacactttg |
151 |
Q |
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|||||||||| ||||| ||||||||||||||| |
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| T |
2535925 |
tttaactttgatttgtatattcataacactttg |
2535893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 47829480 - 47829587
Alignment:
| Q |
20 |
attgctattattcggccggtgtgtttcaacaaaaaccattacaattgtttcatattaaaatcattccgtaattggttgttgcaatggtcattacggttat |
119 |
Q |
| |
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|||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
47829480 |
attgttattattcggccgatgtgtttcaaaaaaaaccattacaatcgtttcatatt-aaatcattctataattggttgctgcaatgttcattacggttat |
47829578 |
T |
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| Q |
120 |
ttaactttg |
128 |
Q |
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|||||||| |
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| T |
47829579 |
gtaactttg |
47829587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 16779567 - 16779696
Alignment:
| Q |
20 |
attgctattattcggccggtgtgtttcaacaaaa-----accattacaattgtttcatattaaaatcattccgtaattggttgttgcaatggtcattacg |
114 |
Q |
| |
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||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||| | ||||| |
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| T |
16779567 |
attgctattattcggccaatgtgtgtcaacaaaaaaaaaaccattacaatcgtttcatattaaaatcattccataattggttgctgcaatgtttattaca |
16779666 |
T |
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| Q |
115 |
gttatttaactttggtttgtgcattcataa |
144 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
16779667 |
gttatttaactttggtttgtatattcataa |
16779696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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