View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15303_low_6 (Length: 334)
Name: NF15303_low_6
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6813063 - 6812866
Alignment:
| Q |
1 |
cacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcag |
100 |
Q |
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| T |
6813063 |
cacttcaaataattggaatgtatccaaagctggtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcag |
6812964 |
T |
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| Q |
101 |
aagctgcacaaggatggagctaattgatagtatcagctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccatgttttgtttt |
198 |
Q |
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| T |
6812963 |
aagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
6812866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6833970 - 6833814
Alignment:
| Q |
1 |
cacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcag |
100 |
Q |
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| T |
6833970 |
cacttcaaataattggaatgtatccaaagcttgtgaatgttgtaaaccatgaaggattatcacctctgcatattcttgctaggaaacctaattgtttcag |
6833871 |
T |
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| Q |
101 |
aagctgcacaaggatggagctaattgatagtatcagctacacttgtaagtaacatca |
157 |
Q |
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| T |
6833870 |
aagctgcacaaggatggagttgattgatcgtatcatttacacttgtaagtaacatca |
6833814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 6819616 - 6819458
Alignment:
| Q |
4 |
ttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcagaag |
103 |
Q |
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| T |
6819616 |
ttcaaataattggaatgtatccaaagcttgtgaatgctgtaaatcatgatggattatcacctctgcatattcttgctaggaagcctaattgtttcagaag |
6819517 |
T |
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| Q |
104 |
ctgcacaaggatggagctaattgatagtatcagctacacttgtaagtaacatcattttt |
162 |
Q |
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| T |
6819516 |
ctgcacaacgatggtgctaattgaacgtattatctacacttgtaagtaacatcactttt |
6819458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 34778528 - 34778383
Alignment:
| Q |
1 |
cacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcag |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
34778528 |
cacttcaattaattggaatgtatccaaagcttgtgaatgctgtaaacca-------------cctctgcatattcttgctaggaagcctaattgtttcag |
34778442 |
T |
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| Q |
101 |
aagctgcacaaggatggagctaattgatagtatcagctacacttgtaagtaacatcattttt |
162 |
Q |
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||| |||||||| ||||||||||||| |||| |||| |||||||||||||||| |||| |
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| T |
34778441 |
aagtggcacaaggctggagctaattgaacgtat---ctacccttgtaagtaacatcactttt |
34778383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 6812143 - 6812090
Alignment:
| Q |
281 |
catatgaagaagatatgcctgaaaataacattaagtctttaaccaattctttag |
334 |
Q |
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| T |
6812143 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttag |
6812090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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