View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15303_low_7 (Length: 279)
Name: NF15303_low_7
Description: NF15303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15303_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 31078083 - 31077932
Alignment:
| Q |
20 |
cttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatcc |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078083 |
cttagagagtagccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatcc |
31077984 |
T |
|
| Q |
120 |
gaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31077983 |
gaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
31077932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 31127401 - 31127255
Alignment:
| Q |
20 |
cttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatcc |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
31127401 |
cttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatct |
31127302 |
T |
|
| Q |
120 |
gaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
166 |
Q |
| |
|
|||||||| ||||||||||| || |||| || ||| | ||||||||| |
|
|
| T |
31127301 |
gaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaa |
31127255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 31132109 - 31131963
Alignment:
| Q |
20 |
cttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatcc |
119 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
31132109 |
cttagagattaacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtcc |
31132010 |
T |
|
| Q |
120 |
gaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
166 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||| || |||||||| |
|
|
| T |
31132009 |
gaatgaccagaacttaaaaatcgcgacaaaatatccaccgattccaa |
31131963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 31077904 - 31077834
Alignment:
| Q |
199 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31077904 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
31077834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
| Q |
199 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt |
247 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
31128902 |
ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt |
31128854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
| Q |
199 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc |
259 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
31127222 |
ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc |
31127162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
| Q |
199 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg |
260 |
Q |
| |
|
||||||| ||| |||| || || || |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31131930 |
ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg |
31131869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University