View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_high_1 (Length: 445)
Name: NF15304_high_1
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 52568900 - 52569345
Alignment:
| Q |
1 |
tttctcgtgaacttatgattaatgggtcattttcaattactgtaattgtaggccccaatgtgttgtttctttgtcacgcattttgcatatcacgtgttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52568900 |
tttctcgtgaacttatgattaatgggtcattttcaattactgtaattgtaggccccaatgtgttgtttctttgtcacgcattttgcatatcacgtgttcg |
52568999 |
T |
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| Q |
101 |
atatattgcctaacacatttttatagctttttctttcatgaaggtgcccgtgtggcacctgcgcatgattctttaaatgttataccttattaagctagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52569000 |
atatattgcctaacacatttttatagctttttcttttatgaaggtgcccgtgtggcacctgcgcatgattctttaaatgttataccttattaagctagca |
52569099 |
T |
|
| Q |
201 |
ggattctttaacttgcaagaaaccatttaaaatttcaaataatattcatttctttgattgcattgttcattcagagatcatgaaatatttctttgtactt |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52569100 |
ggattcttttacttgcaagaaaccatttaaaatttcaaataatattcatttctttgattgcattgttcattcagagatcatgaaatatttctttgtactt |
52569199 |
T |
|
| Q |
301 |
atttcttataattgattgatggttgtgccgggaacatgnnnnnnnctgttccgattgtttttagtaaatatgactatg-tatgatcgatttgagtgtaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52569200 |
atttcttataattgattgatggttgtgccgggaaaacgaaaaaaactgttccgattgtttttagtaaatatgactatgttatgatcgatttgagtgtaat |
52569299 |
T |
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| Q |
400 |
agcaagagtgtttctgtcacatcatttggtgacattcaagaaagga |
445 |
Q |
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| T |
52569300 |
agcaagagtgtttctgtcacatcatttggtggcattcaagaaagga |
52569345 |
T |
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