View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15304_low_10 (Length: 214)
Name: NF15304_low_10
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_10 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 2373994 - 2373877
Alignment:
| Q |
97 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgcctctgcctcctcggctttctttgccctc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2373994 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgcctctgcctcctcggctttctttgccctc |
2373895 |
T |
|
| Q |
197 |
ttgactttcttcctagcc |
214 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2373894 |
ttgactttcttcctagcc |
2373877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 2382077 - 2382194
Alignment:
| Q |
97 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgcctctgcctcctcggctttctttgccctc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2382077 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgcctctgcctcctcggctttctttgccctc |
2382176 |
T |
|
| Q |
197 |
ttgactttcttcctagcc |
214 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2382177 |
ttgactttcttcctagcc |
2382194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 2839355 - 2839472
Alignment:
| Q |
97 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattaatcctttgcctttgcctctgcctcctcggctttctttgccctc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2839355 |
catgaaaaacataatagtgcaaatctagtccttctctaattcttgaaatattcattactcctttgcctttgccttcgcctcctcggctttctttgccctc |
2839454 |
T |
|
| Q |
197 |
ttgactttcttcctagcc |
214 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2839455 |
ttgactttcttcctagcc |
2839472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 2373875 - 2373835
Alignment:
| Q |
174 |
cctcctcggctttctttgccctcttgactttcttcctagcc |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2373875 |
cctcctcggctttccttgccctcttgactttcttcctagcc |
2373835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 2382196 - 2382236
Alignment:
| Q |
174 |
cctcctcggctttctttgccctcttgactttcttcctagcc |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2382196 |
cctcctcggctttccttgccctcttgactttcttcctagcc |
2382236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 1525868 - 1525897
Alignment:
| Q |
122 |
tagtccttctctaattcttgaaatattcat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1525868 |
tagtccttctctaattcttgaaatattcat |
1525897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University