View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_low_2 (Length: 425)
Name: NF15304_low_2
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 127 - 409
Target Start/End: Original strand, 34750583 - 34750862
Alignment:
| Q |
127 |
cctagaaatcttgaaattt-gtatcgatcgataaaacaatattgtgtaaacttttaagcccacacagatgagaaaacaaatttgctactctccattcagg |
225 |
Q |
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| T |
34750583 |
cctagaaattttgaaattttgtaccgatcaataaaacaatgttgtgtaaacttttaagcccacacagatgagaaaacaaatttgctactctccattcagg |
34750682 |
T |
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| Q |
226 |
gacggatgcaatcaagggttatgtgtggctaaaaccacacatgcatagtgctcaaatttttgttatgcaattgtgttgagcttgctcatacataatcatt |
325 |
Q |
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| T |
34750683 |
gacggatgcaatcaagggttatgtgtggctaaaaccacacatgcatagtgctcaaatttttgat----aattgtgttgagcttgctcatacataatcatt |
34750778 |
T |
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| Q |
326 |
tccaaagataaaacatgtgatatctggttgagaataataaaactaattaccttggttgcgaaatctaaaacctaatgttcttta |
409 |
Q |
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| T |
34750779 |
tccaaagataaagcatgtgatatctggttgagaataataaaactaattaccttggttgcgaaatctaaaacctaatgttcttta |
34750862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 5070243 - 5070174
Alignment:
| Q |
329 |
aaagataaaacatgtgatatctggttgagaataataaaactaattaccttggttgcgaaatctaaaacct |
398 |
Q |
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| T |
5070243 |
aaagatgaagcatgtgatatctagttgagaataataaaactaaatactttggttgcgaaatctaaaacct |
5070174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 5070338 - 5070266
Alignment:
| Q |
262 |
acacatgcatagtgctcaaatttttgttatgcaattgtgttgagcttgctcatacataatcatttccaaagat |
334 |
Q |
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| T |
5070338 |
acacatgcataatgctcaattttgtgttatgcaattgtattgagcttgctcttacgtaagcatttcaaaagat |
5070266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 262 - 409
Target Start/End: Original strand, 460979 - 461126
Alignment:
| Q |
262 |
acacatgcatagtgctcaaatttttgttatgcaattgtgttgagcttgctcatacataatcatttccaaagataaaacatgtgatatctggttgagaata |
361 |
Q |
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| T |
460979 |
acacatgcatagtgctcaattttctgtaatgcaattgtgttgagtttgctcatacataaacatttcaaaagatgaagcatgtgatatctagttgagaata |
461078 |
T |
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| Q |
362 |
ataaaactaattaccttggttgcgaaatctaaaacctaatgttcttta |
409 |
Q |
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| T |
461079 |
ataaaactaagtattttggttgcgaaatctaagaccttatgttcttta |
461126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 10381882 - 10381750
Alignment:
| Q |
263 |
cacatgcatagtgctcaaatttttgttatgcaattgtgttgagcttgctcatacataatcatttccaaagataaaacatgtgatatctggttgagaataa |
362 |
Q |
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|||||| |||||||| || ||| | ||||||||| |||||||||||| |||||| ||| |||||| ||| || || |||||||||| | ||||||||||| |
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| T |
10381882 |
cacatgtatagtgcttaattttattttatgcaatcgtgttgagcttgttcatacgtaagcatttcaaaaaatgaagcatgtgatatttagttgagaataa |
10381783 |
T |
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| Q |
363 |
taaaactaattaccttggttgcgaaatctaaaa |
395 |
Q |
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| T |
10381782 |
taaaactaagtactttggttgcaaaatataaaa |
10381750 |
T |
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