View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_low_3 (Length: 397)
Name: NF15304_low_3
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 28 - 388
Target Start/End: Complemental strand, 1435806 - 1435434
Alignment:
| Q |
28 |
gctataccatatattttgttatatgaatttgtctaattttcttagacaaataattaatgaaattttctttaatgtttcagatacttctggtctttacctc |
127 |
Q |
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| T |
1435806 |
gctataccatatattttgttatatgaatttgtctaattttcttagacaaataactaatgaaaatttctttaatgtttcagatacttctggtctttacctc |
1435707 |
T |
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| Q |
128 |
cagtgagcaagacttttggagtggcatgtttcatgacaactgctgcatattatctgaatctttatgatgcagagagcatagcactattttatggcttagt |
227 |
Q |
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| T |
1435706 |
cagtgagcaagacttttggagtggcatgtttcatgacaactgctgcatattatctgaatctttatgatgcagagagcatagcactattttatggcttagt |
1435607 |
T |
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| Q |
228 |
gtttaaacgacttcaggtttgtaatcaaagaaatttccttatccttaagcatagcactacataataatactgaaaatt------------cattcaccat |
315 |
Q |
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| T |
1435606 |
gtttaaacgacttcaagtttgtaatccaaacactttccttatccttaagcatagcactacatactaatactgaaaattcattttctgattcattcatcat |
1435507 |
T |
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| Q |
316 |
ttagttttcttgatcatgtaacatttttgtttatattttttgcaggtttggaggcttatcacaaatttcttct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435506 |
ttagttttcttgatcatgtaacatttttgtttatattttttgcaggtttggaggcttatcacaaatttcttct |
1435434 |
T |
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