View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_low_4 (Length: 337)
Name: NF15304_low_4
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 42158575 - 42158276
Alignment:
| Q |
23 |
gacaaatgtacctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaannnnnnncagtttctaatatctgttgttatatcaac |
122 |
Q |
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| T |
42158575 |
gacaaatgtatctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaatttttttccgtttctaatatctgttgttatatcaac |
42158476 |
T |
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| Q |
123 |
nnnnnnnagtagtgatgatgatgatgtttttgattcggttatgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaa |
222 |
Q |
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| T |
42158475 |
tttttttagtagtgatgatgatgatgtttttgattcggttatgtttacatttgtgactgcaatgcaatacaatgtagggtggggattgaaattccaaaaa |
42158376 |
T |
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| Q |
223 |
ttgaagttcgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
322 |
Q |
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| T |
42158375 |
ttgaagtccgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcctactcttcttaatgttaccatcaatacattggaggt |
42158276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 164 - 322
Target Start/End: Complemental strand, 42178166 - 42178008
Alignment:
| Q |
164 |
tgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtg |
263 |
Q |
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| T |
42178166 |
tgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtg |
42178067 |
T |
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| Q |
264 |
tatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
322 |
Q |
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| T |
42178066 |
tatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
42178008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 187 - 322
Target Start/End: Complemental strand, 42146459 - 42146324
Alignment:
| Q |
187 |
caatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcc |
286 |
Q |
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| T |
42146459 |
caatacaatgtagggtggggattgaaattccaaaaattgaagtacgttatgaaaatttgtctgtggaaggagatgtgcatgttggaagtagagcacttcc |
42146360 |
T |
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| Q |
287 |
tactttgcttaatgttaccatcaacactttggaggt |
322 |
Q |
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| T |
42146359 |
tactctgcttaatgttaccatcaatactttggaggt |
42146324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 42137650 - 42137567
Alignment:
| Q |
190 |
tacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtgtatgttggta |
273 |
Q |
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| T |
42137650 |
tacaatacagggtggggattgaaattccaaaaattgaagtacggttcgaaaatgtatcggtggagggaaatgtgcatgttggta |
42137567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 11373420 - 11373372
Alignment:
| Q |
35 |
tctaattttgttgttaagtgttagagatgccaaatttcgtgaccaattt |
83 |
Q |
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| T |
11373420 |
tctatttttgttgctaagtgttagaaatgccaaatttgatgaccaattt |
11373372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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