View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_low_6 (Length: 320)
Name: NF15304_low_6
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 38186997 - 38186819
Alignment:
| Q |
6 |
gagatgaataaaaacaattcattttgagccctaatcattgaattggtgtttgaatttcaaccttcatggccttgattctcataatcgcttctttcatttt |
105 |
Q |
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| T |
38186997 |
gagatgaataaaaacaattcattttgagcactaatcattgaattggtgtttcaatttcaaccttcatggccttgattctcataatcgcttctttcatttt |
38186898 |
T |
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| Q |
106 |
cctttggattatttctctatgcaaaattttccttctcccccgtacccctttcaccaaacattttaccctcgatggtaag |
184 |
Q |
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| T |
38186897 |
cctttggattatttctctatgcaaaattttccttctcccccgtacccctttcaccaaacattttaccctcgatggtaag |
38186819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 38186733 - 38186692
Alignment:
| Q |
269 |
ggaagagaaatgtcttgcgggttattgctcaccctgatgatg |
310 |
Q |
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| T |
38186733 |
ggaagagaaatgtcttgctggttattgctcaccctgacgatg |
38186692 |
T |
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