View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15304_low_8 (Length: 254)
Name: NF15304_low_8
Description: NF15304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15304_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31629137 - 31628900
Alignment:
| Q |
1 |
ttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaatagaataacacaaaga |
100 |
Q |
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| T |
31629137 |
ttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaatagaataacacaaaga |
31629038 |
T |
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| Q |
101 |
aagttgagttgaactgaaatcaaacctgagagcattatgagaaatggagttgatatggttgattttcgggatacggagagttaagagaatgagaatgagc |
200 |
Q |
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| T |
31629037 |
aagttgagttgaactgaaatcaaacctgagagcattatgagaaatggagttgatatggttgagtttcgggatacggagagttaagagaatgagaatgagc |
31628938 |
T |
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| Q |
201 |
aatgtgaaggtcacaaacaatgtgaagatcaatgtctg |
238 |
Q |
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| T |
31628937 |
aatgtgaaggtcacaaacaatgtgaagatcaatgtctg |
31628900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 31654086 - 31654018
Alignment:
| Q |
168 |
gggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
236 |
Q |
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| T |
31654086 |
gggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31654018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 31643603 - 31643561
Alignment:
| Q |
4 |
aacccaacgcttattgtcattgtcttcacttctgcatagaata |
46 |
Q |
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| T |
31643603 |
aacccaacgcttattgtcatcgtcttcacttctgcatagaata |
31643561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 31650600 - 31650535
Alignment:
| Q |
171 |
atacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
236 |
Q |
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| T |
31650600 |
atacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31650535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31650779 - 31650740
Alignment:
| Q |
1 |
ttgaacccaacgcttattgtcattgtcttcacttctgcat |
40 |
Q |
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| T |
31650779 |
ttgaacccaacgcttattgtcatcgtcttcatttctgcat |
31650740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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