View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15305_high_1 (Length: 414)

Name: NF15305_high_1
Description: NF15305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15305_high_1
NF15305_high_1
[»] chr8 (3 HSPs)
chr8 (331-406)||(8702474-8702549)
chr8 (335-406)||(14382164-14382235)
chr8 (349-397)||(31246391-31246439)
[»] chr3 (1 HSPs)
chr3 (336-397)||(45423844-45423905)
[»] chr4 (4 HSPs)
chr4 (349-397)||(38305973-38306021)
chr4 (365-397)||(42381970-42382002)
chr4 (349-397)||(48257065-48257113)
chr4 (349-397)||(54488567-54488615)
[»] chr1 (2 HSPs)
chr1 (349-397)||(41930-41978)
chr1 (349-397)||(15884227-15884275)
[»] chr7 (1 HSPs)
chr7 (349-397)||(39634228-39634276)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 8702549 - 8702474
Alignment:
Q  331 tgtgatacatctaaaagtaattttgacccaagctatccaaacaacatgaatcgataagaatcactttaagaataat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  8702549 tgtgatacatctaaaagtaattttgacccaagctatccaaacaacatgaattgataagaatcactttaaggataat 8702474  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 14382164 - 14382235
Alignment:
Q  335 atacatctaaaagtaattttgacccaagctatccaaacaacatgaatcgataagaatcactttaagaataat 406  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||    
T  14382164 atacatctaaaagtaattttgacccaaactatccaaataacatgaattgataagaatcactttaaggataat 14382235  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 31246439 - 31246391
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  31246439 aattttgatccaagttatccaaacaacatgaatttataagaatcacttt 31246391  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 45423905 - 45423844
Alignment:
Q  336 tacatctaaaagtaattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||| ||||  ||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  45423905 tacatccaaaatcaattttgattcaagctatccaaacaacatgaattgataagaatcacttt 45423844  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 38305973 - 38306021
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  38305973 aattttgatccaagttatccaaacaacatgaatttataagaatcacttt 38306021  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 42381970 - 42382002
Alignment:
Q  365 atccaaacaacatgaatcgataagaatcacttt 397  Q
    ||||||||||||||||| |||||||||||||||    
T  42381970 atccaaacaacatgaattgataagaatcacttt 42382002  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 48257065 - 48257113
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| ||||  ||||||||||||||||||  ||||||||||||||    
T  48257065 aattttgatccaatttatccaaacaacatgaatttataagaatcacttt 48257113  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 54488567 - 54488615
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  54488567 aattttgatccaagttatccaaacaaaatgaatttataagaatcacttt 54488615  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 41930 - 41978
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| |||||||||||||||||| |||||  ||||||||||||||    
T  41930 aattttgatccaagctatccaaacaacgtgaatttataagaatcacttt 41978  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 15884227 - 15884275
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| |||| |||||||||||||||||||  |||| |||||||||    
T  15884227 aattttgatccaaactatccaaacaacatgaatttataaaaatcacttt 15884275  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 39634276 - 39634228
Alignment:
Q  349 aattttgacccaagctatccaaacaacatgaatcgataagaatcacttt 397  Q
    |||||||| ||||| ||||||||||||| ||||  ||||||||||||||    
T  39634276 aattttgatccaagttatccaaacaacaagaatttataagaatcacttt 39634228  T

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