View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15306_high_1_N (Length: 359)
Name: NF15306_high_1_N
Description: NF15306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15306_high_1_N |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold1543 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 21625986 - 21625673
Alignment:
| Q |
1 |
gccaaggaaccgaaattgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21625986 |
gccaaggaaccgaaattgaaggattgatgcaggacaagagtgcttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgagg |
21625887 |
T |
|
| Q |
101 |
tgggtttcctctcctagacttgaatttaaataattagaattgataccttcacgttggtacagtgattagtatgagatattaagtgattttcatgaatgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21625886 |
tgggtttcctctcctagacttgaatttaaataattagaattgatacctttacattggtaaagtgattagtatgagatattaagtgattttcatgaatgat |
21625787 |
T |
|
| Q |
201 |
aatttctggaaa---ttgttgaaattagaattagggtggattagtgtgtggaactagaattatagttatacaaattctttaactaagctatgtctaggaa |
297 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21625786 |
aatttcttgaaattgttgttgaaattagaattagggtggattagtgtgtggaactagaattatagttatacaaattctttaactaagctatgtttaggaa |
21625687 |
T |
|
| Q |
298 |
cattaagtaattaa |
311 |
Q |
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|||||||||||||| |
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| T |
21625686 |
cattaagtaattaa |
21625673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 21625471 - 21625417
Alignment:
| Q |
305 |
taattaagtcatagacttcttgtgatacttaagaactaggccagtttatagacag |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21625471 |
taattaagtcatagacttcttgtgatacttaagaactaggccaatttatagacag |
21625417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 336284 - 336571
Alignment:
| Q |
16 |
ttgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaagaggaagttgttctttgaggtgggtttcctctcct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
336284 |
ttgaaggattgatgcaggacaagagtccttgttggagacagagttttgggtcaagactgcatcaaccagaagttgtcatttgaggtgggtttcctctcct |
336383 |
T |
|
| Q |
116 |
agacttgaatttaaataattagaattgataccttcacgtt---------ggtacagtgattagtatgagatattaagtgattttcatgaatgataatttc |
206 |
Q |
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|| |||||| |||| || ||| ||||||| ||| | || ||||| ||||||||||||| | |||||||||||||||| || |
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| T |
336384 |
aggcttgaacttaactagttattattgatatctttatattggattaatgggtactgtgattagtatgataaattaagtgattttcat---tg-------- |
336472 |
T |
|
| Q |
207 |
tggaaattgttgaaattagaattagggtggattagtgtgtggaactagaattatagttatacaaattctttaactaagctatgtctaggaacattaagta |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
336473 |
------ttgttgaaattagaattaggatggattagtgtgtggaactagaattatagttatacaaattctttaactaagttatgcctaggaatattaagta |
336566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 1637 - 1583
Alignment:
| Q |
305 |
taattaagtcatagacttcttgtgatacttaagaactaggccagtttatagacag |
359 |
Q |
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|||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |
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| T |
1637 |
taattaagtcatagacttattgtgatacttaagaaataggtcagtttatagacag |
1583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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