View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15306_low_1 (Length: 575)
Name: NF15306_low_1
Description: NF15306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15306_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 21 - 566
Target Start/End: Complemental strand, 30963334 - 30962789
Alignment:
| Q |
21 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963334 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
30963235 |
T |
|
| Q |
121 |
ctacttgtttggtgatgttaacaatgctgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963234 |
ctacttgtttggtgatgttaacaatgttgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
30963135 |
T |
|
| Q |
221 |
accaaagggaaggtacttttattaattaaactttgacctatgattgctttgaaagttaaaccatgtttgaatattgtggtttgatttgctaggactttaa |
320 |
Q |
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| T |
30963134 |
accaaagggaaggtacttttattaattaaactttgacctatgattgctttgaaagttaaaccatgtttgaatattgtggtttgatttgctaggactttaa |
30963035 |
T |
|
| Q |
321 |
aattattgcttttgaagttaactttatgtactttcattaaacttcttcggatcattgcttcggaaaaagtgaaaccattttgaaagtccatgaatgtagt |
420 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30963034 |
aattattgcttttgaagttaactttatgtaatttcattaaacttcttcagatcattgcttccgaaaaagtgaaaccattttgaaagtccatgaatgtagt |
30962935 |
T |
|
| Q |
421 |
agttaaaattaatacttttgaaaattaatataatgtatcttatgaatttgtgtttcatactattcaatgagaggaaaacaaactttttgtaataatcgat |
520 |
Q |
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| T |
30962934 |
agttaaaattaatacttttgaaaattaatataatgtatcttatgaatttgtgtttcatactattcaatgagaggaaaacaaactttttgtaataattgat |
30962835 |
T |
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| Q |
521 |
gtggttggtttgtaggtagtttctggtctcttatacagtgcctttg |
566 |
Q |
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| T |
30962834 |
gtggttggtttgttggtagtttctggtctcttatacagtgcctttg |
30962789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 21 - 566
Target Start/End: Complemental strand, 30979146 - 30978601
Alignment:
| Q |
21 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30979146 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
30979047 |
T |
|
| Q |
121 |
ctacttgtttggtgatgttaacaatgctgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30979046 |
ctacttgtttggtgatgttaacaatgttgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
30978947 |
T |
|
| Q |
221 |
accaaagggaaggtacttttattaattaaactttgacctatgattgctttgaaagttaaaccatgtttgaatattgtggtttgatttgctaggactttaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30978946 |
accaaagggaaggtacttttattaattaaactttgacctatgattgctttgaaagttaaaccatgtttgaatattgtggtttgatttgctaggactttaa |
30978847 |
T |
|
| Q |
321 |
aattattgcttttgaagttaactttatgtactttcattaaacttcttcggatcattgcttcggaaaaagtgaaaccattttgaaagtccatgaatgtagt |
420 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30978846 |
aattattgcttttgaagttaactttatgtaatttcattaaacttcttcagatcattgcttccgaaaaagtgaaaccattttgaaagtccatgaatgtagt |
30978747 |
T |
|
| Q |
421 |
agttaaaattaatacttttgaaaattaatataatgtatcttatgaatttgtgtttcatactattcaatgagaggaaaacaaactttttgtaataatcgat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30978746 |
agttaaaattaatacttttgaaaattaatataatgtatcttatgaatttgtgtttcatactattcaatgagaggaaaacaaactttttgtaataattgat |
30978647 |
T |
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| Q |
521 |
gtggttggtttgtaggtagtttctggtctcttatacagtgcctttg |
566 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30978646 |
gtggttggtttgttggtagtttctggtctcttatacagtgcctttg |
30978601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 34806395 - 34806472
Alignment:
| Q |
158 |
atttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggtaccaaagggaaggta |
235 |
Q |
| |
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|||| ||||||||| || ||||| ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
34806395 |
attttatagatgctagatttggaggagcagatttcaaatatgaagattatccatgtagctggtaccaaagggaaggta |
34806472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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