View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15306_low_3 (Length: 381)
Name: NF15306_low_3
Description: NF15306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15306_low_3 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold1543 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 60 - 375
Target Start/End: Original strand, 21625673 - 21625991
Alignment:
| Q |
60 |
ttaattacttaatgttcctagacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaa- |
158 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21625673 |
ttaattacttaatgttcctaaacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaac |
21625772 |
T |
|
| Q |
159 |
--tttccagaaattatcattcatgaaaatcacttaatatctcatactaatcactgtaccaacgtgaaggtatcaattctaattatttaaattcaagtcta |
256 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21625773 |
aatttcaagaaattatcattcatgaaaatcacttaatatctcatactaatcactttaccaatgtaaaggtatcaattctaattatttaaattcaagtcta |
21625872 |
T |
|
| Q |
257 |
ggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatccttcaat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21625873 |
ggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaagcactcttgtcctgcatcaatccttcaat |
21625972 |
T |
|
| Q |
357 |
ttcggttccttggctctct |
375 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21625973 |
ttcggttccttggctctct |
21625991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21625406 - 21625471
Alignment:
| Q |
1 |
tttcttttgctctgtctataaactggcctagttcttaagtatcacaagaagtctatgacttaatta |
66 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21625406 |
tttctttttctctgtctataaattggcctagttcttaagtatcacaagaagtctatgacttaatta |
21625471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 60 - 355
Target Start/End: Complemental strand, 336571 - 336284
Alignment:
| Q |
60 |
ttaattacttaatgttcctagacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaat |
159 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
336571 |
ttaattacttaatattcctaggcataacttagttaaagaatttgtataactataattctagttccacacactaatccatcctaattctaatttcaacaa- |
336473 |
T |
|
| Q |
160 |
ttccagaaattatcattcatgaaaatcacttaatatctcatactaatcactgtacc---------aacgtgaaggtatcaattctaattatttaaattca |
250 |
Q |
| |
|
|| |||||||||||||||| | ||||||||||||| ||||| || | ||| ||||||| ||| || |||| |||| |
|
|
| T |
336472 |
-------------ca---atgaaaatcacttaatttatcatactaatcacagtacccattaatccaatataaagatatcaataataactagttaagttca |
336389 |
T |
|
| Q |
251 |
agtctaggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatcc |
350 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336388 |
agcctaggagaggaaacccacctcaaatgacaacttctggttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatcc |
336289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1572 - 1637
Alignment:
| Q |
1 |
tttcttttgctctgtctataaactggcctagttcttaagtatcacaagaagtctatgacttaatta |
66 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
1572 |
tttctttttctctgtctataaactgacctatttcttaagtatcacaataagtctatgacttaatta |
1637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University