View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15306_low_4 (Length: 328)
Name: NF15306_low_4
Description: NF15306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15306_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 55263569 - 55263744
Alignment:
| Q |
139 |
ttcgattgttaccttttcataaaactttatggcacgttctaa-tcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
237 |
Q |
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| T |
55263569 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
55263668 |
T |
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| Q |
238 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctccc |
313 |
Q |
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| T |
55263669 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctccc |
55263744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 55270433 - 55270608
Alignment:
| Q |
139 |
ttcgattgttaccttttcataaaactttatggcacgttctaa-tcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55270433 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcggagacttatttgacagaatgggtcgtgaactataggtctttgaaca |
55270532 |
T |
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| Q |
238 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctccc |
313 |
Q |
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| T |
55270533 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctccc |
55270608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 55263441 - 55263539
Alignment:
| Q |
1 |
taactcatcaaatacaattctctgattctattttgtacatacaagcaaaagctatcaaatagtacaagtactaatcttgactcttcgcagacaggaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55263441 |
taactcatcaaatacaattctctgattctattttgtacatacaaccaaaagctatcaaatagtacaagtactaatcttgactcttcgcacacaggaaat |
55263539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 55270305 - 55270403
Alignment:
| Q |
1 |
taactcatcaaatacaattctctgattctattttgtacatacaagcaaaagctatcaaatagtacaagtactaatcttgactcttcgcagacaggaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
55270305 |
taactcatcaaatacaattctctgattctattttgtacatacaaccaaaagctatcaaatagtacaagtactaatcttgactcttcacacacaggaaat |
55270403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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