View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15307_low_1 (Length: 553)
Name: NF15307_low_1
Description: NF15307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15307_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 35957635 - 35957099
Alignment:
| Q |
18 |
acttttagtattgttttactttctagaagtaaacatcttcacaagtcacaaaatgaagaagatgaaaatgcaaactccggctgctgagagagctagagct |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35957635 |
actttaagtattgttttactttctagaagtaaacatcttcacaagtcacaaaatgaagaagatgaaaatgcaaactccggctgctgagag--ctagagct |
35957538 |
T |
|
| Q |
118 |
ggctgcttgtattgttttacttcttgacaaaatgataatgatacatccataaaattgacggagggatattacaataacaaatcaacttgcctaaaagaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35957537 |
ggctgcttgtattgttttacttcttgacaaaatgataatgatacatccataaaattgacggagggatat---aataacaaatcaacttgcctaaaagaaa |
35957441 |
T |
|
| Q |
218 |
ggcaataaataacgaaatcaaccaaaataaaccaaatcttggaattgattgagtgattggttattgagagaaattatattcgctgttaatatgtgaatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35957440 |
ggcaataaataacgaaatcaaccaaaataaaccaaatcttggaattgattgagtgattggttattgagagaaattatattcgctgttaatatgtgaatgg |
35957341 |
T |
|
| Q |
318 |
acttatttagctgctcctatcacctatttagcaagatccatcaagaaaattatacgcaaattgactttctcgaccttttgtgaattcatggaaacgtgaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35957340 |
acttatttagctgctcctatcacctatttagcaagatccatcaag-aaattatacgcaaattgactttgtcgaccttttgtgaattcatggaaacgtgaa |
35957242 |
T |
|
| Q |
418 |
aaaattggttttgagattagttgctatatatagacttcattgtc-----------tgaaatatattaatttttaatgaaaactattaatgtattttatca |
506 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35957241 |
aaaattggttttgtgattagttgctatatatagactttattgtctctttcttttatgaaatatattaatttttaatgaaaactattaatgta-tttatca |
35957143 |
T |
|
| Q |
507 |
acgagggtctacattgctccttaataaattgagaataatctacc |
550 |
Q |
| |
|
||||||||||||||| |||||| || |||||||| |||| |||| |
|
|
| T |
35957142 |
acgagggtctacattactccttgatgaattgagagtaatttacc |
35957099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University