View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15307_low_2 (Length: 430)
Name: NF15307_low_2
Description: NF15307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15307_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 43107741 - 43108139
Alignment:
| Q |
10 |
gaagtagaaaaattgtgaaaatggaacgtgaatcggtgaattatgttcatgtgttttgattatgtgaactatgtgatgtgatgtgctaagatgagaatgg |
109 |
Q |
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| T |
43107741 |
gaagtagaaaaattgtgaaaatggaacgtgaatcggtgaattatgttcatgtgttttgattatgtgaactatgtgatgtg-----ctaagatgtgaatgg |
43107835 |
T |
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| Q |
110 |
tgcattgcnnnnnnnncttgcttatatgatgattaagtagacctccacttgcaattgtgaacttgttgagattattcaagtatataaattattcaaagct |
209 |
Q |
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| T |
43107836 |
agcatcgcaaaaaaa-cttgcttatatgatgactaagtagacctccacttgcaattgtgaacttgttgagattattcaagtatataaattattcaaagct |
43107934 |
T |
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| Q |
210 |
taggtcaactccaagtgcttccaatcaattctaannnnnnnnnaccatggtattgatatgaaattttccccattatttagtagtgattaatattcatttt |
309 |
Q |
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| T |
43107935 |
taggtcaactccaagtgcttccaatcaattctaatttttttttaccatggtattgatatgaaattttccccattatttagtagtgattaatattcattta |
43108034 |
T |
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| Q |
310 |
aaaatttgtggatatacaatgtaagttctcctcttccaattagattttctccatacataaaagttaaagatcgaactcatgatcacatgtttaaaggacc |
409 |
Q |
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| T |
43108035 |
aaaatttgtggatatacaatgtaagttctcctcttccaaccagattttcttcatacgtaaaagttaaagatcgaactcatgatcacatgtttaaaggacc |
43108134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 19246308 - 19246371
Alignment:
| Q |
340 |
ctcttccaattagattttctccatacataaaagttaaagatcgaactcatgatcacatgtttaa |
403 |
Q |
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| T |
19246308 |
ctctcccaaatagattttctcgatacacaaaagtaagagattgaactcatgatcacttgtttaa |
19246371 |
T |
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