View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15308_high_2 (Length: 423)
Name: NF15308_high_2
Description: NF15308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15308_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 28938773 - 28938687
Alignment:
| Q |
28 |
gctataaaggttagtaggttacaatctccatgatattgattctatagaaatatttgtctttagacatgttgtttttcatgaagattt |
114 |
Q |
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| T |
28938773 |
gctataaaggttagtaggttacaatctccatgatattcattctatagaaatatttgtctttagacatgttgtttttcatgaacattt |
28938687 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 20698990 - 20698909
Alignment:
| Q |
43 |
aggttacaatctccatgatattgattctatagaaatatttgtctttagacatgttgtttttcatgaagattttcttccttat |
124 |
Q |
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| T |
20698990 |
aggttacaatctccttgatattcattctagagaaatatttgtatctaaacatgttatttttcatgaacacttccttccttat |
20698909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 44230075 - 44230128
Alignment:
| Q |
73 |
agaaatatttgtctttagacatgttgtttttcatgaagattttcttccttatcc |
126 |
Q |
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| T |
44230075 |
agaaatatttgtttctagacatgttgtttttcatgaatattttttaccttatcc |
44230128 |
T |
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