View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15308_high_5 (Length: 248)
Name: NF15308_high_5
Description: NF15308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15308_high_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 41248064 - 41247831
Alignment:
| Q |
15 |
tatgtgaccgtgggagtatttgattggcttatttgagttatctttaggtgcatcgaatgtattttaggaaaatgtcacaaacaaataaataaatgatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248064 |
tatgtgaccgtgggagtatttgattggcttatttgagttatctttaggtgcatccaatgtattttaggaaaatgtcacaaacaaataaataaatgatgaa |
41247965 |
T |
|
| Q |
115 |
ggtgtacaacacaggaaaatgttagcatatggaagtgatgaggaatggtagtgagacaaatatctgcaacttgtgtcgttccttacagagctttcaatgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247964 |
ggtgtacaacacaggaaaatgttagcatatggaagtgatgaggaatggtagtgagacaaatatctgcaacttgtgtcgttccttacagagctttcaatgt |
41247865 |
T |
|
| Q |
215 |
gcagacacggcatctccgtgtctacgatgatcac |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41247864 |
gcagacacggcatctccgtgtctacgatgatcac |
41247831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University