View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15308_low_1 (Length: 758)
Name: NF15308_low_1
Description: NF15308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15308_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 125 - 363
Target Start/End: Original strand, 39819972 - 39820209
Alignment:
| Q |
125 |
tactagtactagaatgaaatgaaggagacagccaattaaattgtattcaattgctcattacctaccaccctactcaaatcatacaacaaaacaatttgat |
224 |
Q |
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| T |
39819972 |
tactagtactagaatgaaatgaaggagacagccaattaaattgtattcaattgctcattacctaccaccctactcaaatcatacaacaaaacaatttgat |
39820071 |
T |
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| Q |
225 |
ggcctcattatgaccaccacatcaatgcaatctaagatcatcattgtcccaacggctgtcacatgagtaattttgatacacattagtgtctatatcatga |
324 |
Q |
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| T |
39820072 |
ggcctcattatgaccaccacatcaatgcaatctaagatcatcattgtcccaacggctgtcacatgagtaattttgatacacattagtgtctatatcatga |
39820171 |
T |
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| Q |
325 |
gcttatatttatttaattcatttatttctttatcatcat |
363 |
Q |
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| T |
39820172 |
gcttatatttatttaattcatttaattc-ttatcatcat |
39820209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 381 - 558
Target Start/End: Original strand, 39820655 - 39820832
Alignment:
| Q |
381 |
aatgtaaatcatcatttaatttcaacttttgtgactttacacataataggagttaattagtacatgctaatactactaattatattatgtgagtacttta |
480 |
Q |
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| T |
39820655 |
aatgtaaatcatcatttaatttcaacttttatgacttcacacataataggagttaattggtacatgctaatactactaattatattatgtgagtacttta |
39820754 |
T |
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| Q |
481 |
agtttaacaagctattattacatctcccaaaagcactgcaagctgcaacccttcctgattcctgcaatatcttaagac |
558 |
Q |
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| T |
39820755 |
agtttaacaagctattattacatctcccaaaagcactgcaagctgcaacccttcctgattcctgcaatttcttaagac |
39820832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 618 - 743
Target Start/End: Original strand, 39820892 - 39821017
Alignment:
| Q |
618 |
cacacacacctgtgttttccttgactttagattaatttatagacactcataaagtatgtttcagaatcacctcaaattctatagaactgcatgaactcat |
717 |
Q |
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| T |
39820892 |
cacacacacctgtgttttccttgactttagattaatttatagacactcataaagtatgtttcagaatcacctcaaattctatagaactgcatgaactcat |
39820991 |
T |
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| Q |
718 |
gtggttttcgattctccacaactttc |
743 |
Q |
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| T |
39820992 |
gtggttttcgattctccacaactttc |
39821017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 39819838 - 39819961
Alignment:
| Q |
14 |
aggaccacctcacctgccaattaatgtacatatttctacagaaagagaagttgtaaagcctgttactttggttcagatgatcaattgctcctttttacag |
113 |
Q |
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| T |
39819838 |
aggaccacctcacctgccaattaatgtacatatttctatagaaagagaagctgtaaagcctgctactttggttcagatgatcaattgctcctttttacag |
39819937 |
T |
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| Q |
114 |
gaaaaaattactactagtactaga |
137 |
Q |
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| T |
39819938 |
gaaaaaattactactagtactaga |
39819961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 11670933 - 11670885
Alignment:
| Q |
381 |
aatgtaaatcatcatttaatttcaacttttgtgactttacacataatag |
429 |
Q |
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| T |
11670933 |
aatgtaaatgatcatttaatttccacttttgtgactttacacataatag |
11670885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 11670883 - 11670818
Alignment:
| Q |
493 |
tattattacatctcccaaaagcactgcaagctgcaacccttcctgattcctgcaatatcttaagac |
558 |
Q |
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| T |
11670883 |
tattattacaactcctaaaaatactgcaagctgcaacccttccggatttctacaatatcttaagac |
11670818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 2685967 - 2686015
Alignment:
| Q |
381 |
aatgtaaatcatcatttaatttcaacttttgtgactttacacataatag |
429 |
Q |
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| T |
2685967 |
aatgtaaatgatcatttaatttccacttttgtgattttacacataatag |
2686015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 553
Target Start/End: Original strand, 2686017 - 2686077
Alignment:
| Q |
493 |
tattattacatctcccaaaagcactgcaagctgcaacccttcctgattcctgcaatatctt |
553 |
Q |
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| T |
2686017 |
tattattacaactcccaaaaataccgcaagctgcaacccttccgaatttctgcaatatctt |
2686077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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