View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15308_low_4 (Length: 419)
Name: NF15308_low_4
Description: NF15308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15308_low_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 72 - 419
Target Start/End: Complemental strand, 36527328 - 36526979
Alignment:
| Q |
72 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcattannnnnnnnngg |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36527328 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcattatttttttttgg |
36527229 |
T |
|
| Q |
172 |
gagcatctattaactactactattcatttattaatacgataatttttaaattttacaaatcttacggcctcccaaaatatttacatgtaattagcagttt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527228 |
gagcatctattaactactactattcatttattaatacgataatttttaaattttacaaatcttacggcctcccaaaatatttacatgtaattagcagttt |
36527129 |
T |
|
| Q |
272 |
taacatatttcaattgctgtttttcccatgcaaaatattactattcaattcaatatcagtatctttg--atgcaatagccaacaatcaaaattccaatgc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36527128 |
taacatatttcaattgctgtttttcccatgcaaaatattactattcaattcaatatcagtatctttgatatgcaatagccaacaatcaaaattccaatgc |
36527029 |
T |
|
| Q |
370 |
atcatctctttgtttcttcataggatttcaaacttcaggttgtctaaggg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527028 |
atcatctctttgtttcttcataggatttcaaacttcaggttgtctaaggg |
36526979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 36527379 - 36527342
Alignment:
| Q |
17 |
atcttttaggtttaacaatttatacaaatacaagaccaa |
55 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36527379 |
atcttttaggtttaacaatttat-caaatacaagaccaa |
36527342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University