View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15308_low_7 (Length: 275)
Name: NF15308_low_7
Description: NF15308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15308_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 37079360 - 37079618
Alignment:
| Q |
1 |
atctgccgcggcgatgtcaaaggaactgagaaactggagtgaagtcagagatttgtatcgaagagcgtctgaattgtacattgaatgtgggagatctcag |
100 |
Q |
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| T |
37079360 |
atctgccgcggcgatgtcaaaggaactgagaaactggagtgaagtcagagatttgtatcgaagagcgtctgaattgtacattgaatgtgggagatctcaa |
37079459 |
T |
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| Q |
101 |
cctgcatcagatgctcttgcgaagggtgcccggtagctaaacatattgtttaaattaaagaaatgattttatatgttggatcatgaaaaatgagagtcca |
200 |
Q |
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| T |
37079460 |
cctgcatcagatgctcttgcgaagggtgcccggtagctaaacatattgtttaaattaaagaaatgattttatatgttggatcttgaaaaatgagagtcca |
37079559 |
T |
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| Q |
201 |
ctaggaattcaataataaaacttttt--tctctctcataataccttttgccttccctat |
257 |
Q |
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| T |
37079560 |
ctgggaattcaataataaaacttttttctctctctcataataccttttgccttccctat |
37079618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 20665142 - 20665257
Alignment:
| Q |
20 |
aaggaactgagaaactggagtgaagtcagagatttgtatcgaagagcgtctgaattgtacattgaatgtgggagatctcagcctgcatcagatgctcttg |
119 |
Q |
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||||| ||||| |||||||| ||||| ||| || |||| || |||||||| |||||||| || ||||||||| | || |||||||| |||||||||| |
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| T |
20665142 |
aaggagctgagcaactggagagaagttgcagacttctatcaaaaggcgtctgagttgtacatggagtgtgggagaccacaacctgcatctgatgctcttg |
20665241 |
T |
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| Q |
120 |
cgaagggtgcccggta |
135 |
Q |
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| T |
20665242 |
caaagggggcccggta |
20665257 |
T |
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