View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_high_1 (Length: 764)
Name: NF15309_high_1
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 44693397 - 44692796
Alignment:
| Q |
1 |
acagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693397 |
acagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaact |
44693298 |
T |
|
| Q |
101 |
agcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693297 |
agcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcac |
44693198 |
T |
|
| Q |
201 |
tcataataaaggcaggccggtatattaaggcgggataggcaccacctccacgataaaactttaacctc-tcaatgatttccaacacttccttcaccttgt |
299 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
44693197 |
tcataataaaggcaggccggtatcttaaggctggataggcaccacctccacgataaaactttaacctcctcaacgatttccaacacttccttcaccttgt |
44693098 |
T |
|
| Q |
300 |
cattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693097 |
cattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgc |
44692998 |
T |
|
| Q |
400 |
attccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaa |
499 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692997 |
attccaacagagccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaa |
44692898 |
T |
|
| Q |
500 |
tgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggcattcctcctacgaagattccacc |
599 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44692897 |
tgcacaaaaaggtgattagatatttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggcattccttctacgaagattccacc |
44692798 |
T |
|
| Q |
600 |
gc |
601 |
Q |
| |
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|| |
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| T |
44692797 |
gc |
44692796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 595 - 745
Target Start/End: Complemental strand, 44692758 - 44692608
Alignment:
| Q |
595 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
694 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
44692659 |
T |
|
| Q |
695 |
ccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaa |
745 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44692658 |
ccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaa |
44692608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 277 - 576
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
| Q |
277 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
376 |
Q |
| |
|
||||| ||| || ||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||| || ||||||||||||||||| ||||||||| |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
377 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc |
476 |
Q |
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| |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| || || || |||| |
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| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc |
34866271 |
T |
|
| Q |
477 |
aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc |
576 |
Q |
| |
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||||||||||||||||| ||||||| | || |||||| | ||| ||||| | || ||||||| || |||| || ||||| |||||||| || ||||| |
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| T |
34866272 |
aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc |
34866371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 595 - 734
Target Start/End: Original strand, 34866434 - 34866572
Alignment:
| Q |
595 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
694 |
Q |
| |
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||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||||||||| || ||||||| ||| |
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| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt |
34866533 |
T |
|
| Q |
695 |
ccccatacatagatttaaccgtaaaattcccatcatcttc |
734 |
Q |
| |
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| ||||||||||||| ||||| || ||||| || ||||| |
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| T |
34866534 |
-cgcatacatagatttcaccgtgaatttcccttcgtcttc |
34866572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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