View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_high_12 (Length: 251)
Name: NF15309_high_12
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29236613 - 29236376
Alignment:
| Q |
1 |
taactattctgactcccattgtgacatttgtatcctccatacaaaatttaaaaaccatttattctccattaacctttttgtagtgagaacatatctttca |
100 |
Q |
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| T |
29236613 |
taactattatgactcccattgtgacatgtgtatcctccatacaaaattcaaaaaccatttattctccattaacctttttgtagtgacaacatatctttca |
29236514 |
T |
|
| Q |
101 |
agcgattatctaggatccaagaataccaaccagaattgtactcggctccctgcactctcaaataccaaccttaacgaatggcttgtctcgctaagtctta |
200 |
Q |
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| T |
29236513 |
agcgattatctaggatccaagaataccaaccagaattttactcggcttcctccactctcaaataccaaccttaacgaatggcttgtctcgctaagtctta |
29236414 |
T |
|
| Q |
201 |
taccttgaattttg--ttcaaatctttcacgaacttgt |
236 |
Q |
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| || ||||||||| |||||||||||||||||||||| |
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| T |
29236413 |
ttccctgaattttgttttcaaatctttcacgaacttgt |
29236376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 45166591 - 45166558
Alignment:
| Q |
183 |
ttgtctcgctaagtcttataccttgaattttgtt |
216 |
Q |
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| T |
45166591 |
ttgtctcgctgagtcttataccttgaattttgtt |
45166558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 8535138 - 8535105
Alignment:
| Q |
181 |
gcttgtctcgctaagtcttataccttgaattttg |
214 |
Q |
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| T |
8535138 |
gcttgtctcgctgagtcttataccttgaattttg |
8535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 2404488 - 2404546
Alignment:
| Q |
181 |
gcttgtctcgctaagtcttataccttgaatt---ttgttcaaatctttcacgaacttgt |
236 |
Q |
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|||||||||||| |||||||||||||||||| || ||||| |||| ||||||||||| |
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| T |
2404488 |
gcttgtctcgctgagtcttataccttgaattctgtttttcaattcttccacgaacttgt |
2404546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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