View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15309_high_16 (Length: 237)

Name: NF15309_high_16
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15309_high_16
NF15309_high_16
[»] chr1 (5 HSPs)
chr1 (1-221)||(7583152-7583372)
chr1 (128-217)||(7098001-7098090)
chr1 (1-92)||(7097874-7097962)
chr1 (1-41)||(21516785-21516825)
chr1 (2-38)||(31117863-31117899)
[»] chr4 (1 HSPs)
chr4 (91-217)||(13615409-13615536)
[»] chr5 (5 HSPs)
chr5 (17-95)||(17981321-17981401)
chr5 (91-202)||(17981492-17981603)
chr5 (46-88)||(30202553-30202595)
chr5 (136-201)||(30202744-30202809)
chr5 (99-181)||(29710365-29710447)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7583372 - 7583152
Alignment:
Q  1 tataaaccacaagctcaaatatgtgtcttaccaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583372 tataaaccacaagctcaaatatgtgtcttaccaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaacatc 7583273  T
Q  101 tctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583272 tctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggc 7583173  T
Q  201 atccagcaatattcaacaaat 221  Q
    |||||||||||||||||||||    
T  7583172 atccagcaatattcaacaaat 7583152  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 7098001 - 7098090
Alignment:
Q  128 agttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggcatccagcaatattcaac 217  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| |||||    
T  7098001 agttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggcatccaacaatagtcaac 7098090  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 7097874 - 7097962
Alignment:
Q  1 tataaaccacaagctcaaatatgtgtcttaccaaacaga-cctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgtt 92  Q
    ||||||||  ||||||||||||||||||||| ||| ||| ||||||| || |||||| ||||||||    |||||||||||||||||||||||    
T  7097874 tataaaccgtaagctcaaatatgtgtcttactaaatagaccctaaaataatcacaatgaaaaggat----ggagaataaagagcctacctgtt 7097962  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21516785 - 21516825
Alignment:
Q  1 tataaaccacaagctcaaatatgtgtcttaccaaacagacc 41  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21516785 tataagccataagctcaaatatgtgtcttaccaaacagacc 21516825  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 31117863 - 31117899
Alignment:
Q  2 ataaaccacaagctcaaatatgtgtcttaccaaacag 38  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  31117863 ataagccataagctcaaatatgtgtcttaccaaacag 31117899  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 13615409 - 13615536
Alignment:
Q  91 ttcaaacatctctgcttctt-cattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgt 189  Q
    ||||||||||||||||| || ||||||| | |||||  ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| ||| | |    
T  13615409 ttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttctt 13615508  T
Q  190 caatattgggcatccagcaatattcaac 217  Q
    |||| |||||||||||  ||||||||||    
T  13615509 caatgttgggcatccaaaaatattcaac 13615536  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 17981321 - 17981401
Alignment:
Q  17 aaatatgtgtcttaccaaacagac-ctaaaagaaacacaatcaaaa-ggatggagggagaataaagagcctacctgttcaa 95  Q
    |||||| |||||||||||||  || ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  17981321 aaatatttgtcttaccaaacgaactctaaaagaaacacaatcaaaaaggatggagggagaataaagagcttacccgttcaa 17981401  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 17981492 - 17981603
Alignment:
Q  91 ttcaaacatctctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtc 190  Q
    |||||||||||||||||  |||||||||  |||||  |||| || |||||| |||||||||| ||||||||| || |||||||  |||||| ||| |  |    
T  17981492 ttcaaacatctctgctttctcattctaaggaatgtgcagttctggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctcc 17981591  T
Q  191 aatattgggcat 202  Q
    ||| ||||||||    
T  17981592 aatgttgggcat 17981603  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 30202553 - 30202595
Alignment:
Q  46 agaaacacaatcaaaaggatggagggagaataaagagcctacc 88  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  30202553 agaaacataatcaaaaggatggcgggagaataaagagcctacc 30202595  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 30202744 - 30202809
Alignment:
Q  136 aatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgtcaatattgggca 201  Q
    |||||| |||||||||| |||||  ||||||||||||| ||||||| | ||| |||||||||||||    
T  30202744 aatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggca 30202809  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 29710447 - 29710365
Alignment:
Q  99 tctctgcttcttcattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcat 181  Q
    ||||| ||||||||| |||||||||||| | ||||| || |||||||||||||| | | || |||| || ||||| |||||||    
T  29710447 tctctacttcttcatcctaactaatgtctaattttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcat 29710365  T

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