View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15309_high_3 (Length: 603)
Name: NF15309_high_3
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 314 - 503
Target Start/End: Original strand, 4150693 - 4150882
Alignment:
| Q |
314 |
ttgctgaaaaagtcacccttggcaaaggctgtgatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
413 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
4150693 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4150792 |
T |
|
| Q |
414 |
ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcctttagtaaggattgaat |
503 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4150793 |
ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcgtatagtaaggattgaat |
4150882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 314 - 503
Target Start/End: Original strand, 4166462 - 4166651
Alignment:
| Q |
314 |
ttgctgaaaaagtcacccttggcaaaggctgtgatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
413 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
4166462 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4166561 |
T |
|
| Q |
414 |
ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcctttagtaaggattgaat |
503 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4166562 |
ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcgtatagtaaggattgaat |
4166651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 4150332 - 4150452
Alignment:
| Q |
10 |
tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4150332 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4150431 |
T |
|
| Q |
110 |
attggtttaggaaaaacatag |
130 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4150432 |
attggtttaggaaaaacatag |
4150452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 4166101 - 4166221
Alignment:
| Q |
10 |
tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4166101 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4166200 |
T |
|
| Q |
110 |
attggtttaggaaaaacatag |
130 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4166201 |
attggtttaggaaaaacatag |
4166221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
| Q |
202 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
301 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4150524 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4150623 |
T |
|
| Q |
302 |
caaaacttgaaattgctgaaaa |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4150624 |
caaaacttgaaattgctgaaaa |
4150645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
| Q |
202 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
301 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166293 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4166392 |
T |
|
| Q |
302 |
caaaacttgaaattgctgaaaa |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4166393 |
caaaacttgaaattgctgaaaa |
4166414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 512 - 585
Target Start/End: Original strand, 4151212 - 4151285
Alignment:
| Q |
512 |
atttcatgttttcaattttggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcag |
585 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4151212 |
atttcatgctttcactttcggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcag |
4151285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 512 - 585
Target Start/End: Original strand, 4166981 - 4167054
Alignment:
| Q |
512 |
atttcatgttttcaattttggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcag |
585 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166981 |
atttcatgctttcactttcggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcag |
4167054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
24 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||| ||||||||||| || |||||| |||||||| |||||||| |
|
|
| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
34 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
101 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 576
Target Start/End: Original strand, 7021004 - 7021054
Alignment:
| Q |
526 |
attttggtcttatttgcaacatatattgcatctaaatttgggttttgcaga |
576 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
7021004 |
atttttgtctgatttgcaacatatattgcctctaaatttaggttttacaga |
7021054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University