View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15309_low_10 (Length: 375)

Name: NF15309_low_10
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15309_low_10
NF15309_low_10
[»] chr5 (18 HSPs)
chr5 (18-364)||(27796321-27796666)
chr5 (22-357)||(33170499-33170834)
chr5 (18-357)||(25856403-25856742)
chr5 (18-357)||(33384937-33385276)
chr5 (18-357)||(28534640-28534979)
chr5 (18-334)||(42514557-42514873)
chr5 (18-357)||(23239220-23239557)
chr5 (114-317)||(27165099-27165301)
chr5 (18-357)||(30731278-30731617)
chr5 (18-182)||(8299322-8299485)
chr5 (39-140)||(22094430-22094531)
chr5 (37-143)||(1821324-1821431)
chr5 (22-143)||(36256616-36256737)
chr5 (67-143)||(30509201-30509277)
chr5 (67-143)||(30549544-30549620)
chr5 (88-143)||(20207898-20207953)
chr5 (18-76)||(35983036-35983094)
chr5 (67-143)||(26263179-26263255)
[»] chr8 (14 HSPs)
chr8 (18-364)||(13878444-13878790)
chr8 (18-357)||(20825137-20825476)
chr8 (18-317)||(10530497-10530796)
chr8 (18-353)||(7925223-7925558)
chr8 (18-334)||(32267391-32267707)
chr8 (37-320)||(41664369-41664652)
chr8 (18-357)||(9923438-9923777)
chr8 (18-334)||(8300640-8300956)
chr8 (18-154)||(17700317-17700453)
chr8 (43-142)||(14345099-14345198)
chr8 (18-111)||(42176767-42176860)
chr8 (46-140)||(4987246-4987340)
chr8 (40-140)||(16375284-16375384)
chr8 (283-324)||(36493483-36493524)
[»] chr4 (19 HSPs)
chr4 (18-364)||(48312931-48313277)
chr4 (22-320)||(19732990-19733287)
chr4 (43-287)||(55724741-55724985)
chr4 (18-320)||(19756104-19756406)
chr4 (18-320)||(19783400-19783702)
chr4 (18-334)||(23641578-23641894)
chr4 (18-353)||(1827508-1827843)
chr4 (19-353)||(47419642-47419976)
chr4 (18-334)||(23647236-23647552)
chr4 (31-353)||(11586152-11586473)
chr4 (22-143)||(29552979-29553100)
chr4 (18-140)||(55299458-55299580)
chr4 (46-140)||(8935939-8936033)
chr4 (18-140)||(23872658-23872780)
chr4 (46-140)||(19648560-19648654)
chr4 (37-143)||(40688937-40689043)
chr4 (18-130)||(20675872-20675984)
chr4 (67-121)||(2365891-2365945)
chr4 (18-140)||(19115273-19115395)
[»] chr3 (17 HSPs)
chr3 (18-364)||(48568980-48569326)
chr3 (22-357)||(962127-962462)
chr3 (18-357)||(19891514-19891853)
chr3 (18-327)||(16179777-16180086)
chr3 (18-322)||(17077297-17077600)
chr3 (18-357)||(34331779-34332118)
chr3 (18-334)||(2365115-2365431)
chr3 (18-206)||(12341370-12341558)
chr3 (18-353)||(19919197-19919532)
chr3 (204-357)||(12334052-12334205)
chr3 (203-319)||(15313203-15313319)
chr3 (18-130)||(6175668-6175780)
chr3 (40-143)||(43120852-43120955)
chr3 (18-120)||(19876080-19876182)
chr3 (277-310)||(46907681-46907714)
chr3 (67-143)||(23819451-23819527)
chr3 (275-323)||(52250123-52250171)
[»] chr2 (9 HSPs)
chr2 (18-364)||(33515150-33515496)
chr2 (18-364)||(28253566-28253912)
chr2 (22-148)||(12646391-12646517)
chr2 (40-140)||(13551441-13551541)
chr2 (57-143)||(2207000-2207086)
chr2 (40-125)||(28399746-28399831)
chr2 (169-314)||(30204479-30204624)
chr2 (70-130)||(15018566-15018626)
chr2 (69-125)||(32191944-32192000)
[»] scaffold1350 (1 HSPs)
scaffold1350 (22-357)||(385-720)
[»] chr6 (13 HSPs)
chr6 (22-357)||(13938559-13938894)
chr6 (18-357)||(21629086-21629425)
chr6 (22-357)||(17605298-17605633)
chr6 (25-356)||(18681539-18681870)
chr6 (67-364)||(15955940-15956230)
chr6 (18-357)||(17576681-17577020)
chr6 (76-357)||(24766388-24766669)
chr6 (18-357)||(2554442-2554780)
chr6 (40-140)||(26206192-26206292)
chr6 (46-140)||(33640782-33640876)
chr6 (18-140)||(15674669-15674791)
chr6 (22-144)||(12673296-12673418)
chr6 (283-324)||(10363248-10363289)
[»] chr1 (9 HSPs)
chr1 (18-364)||(47622034-47622380)
chr1 (18-334)||(6051440-6051756)
chr1 (18-334)||(35541871-35542187)
chr1 (18-120)||(51052718-51052820)
chr1 (40-140)||(5497945-5498045)
chr1 (46-134)||(25504179-25504267)
chr1 (40-140)||(48072607-48072707)
chr1 (18-140)||(32352493-32352615)
chr1 (88-143)||(26721540-26721595)
[»] scaffold0034 (1 HSPs)
scaffold0034 (18-334)||(104830-105146)
[»] chr7 (11 HSPs)
chr7 (18-334)||(4937115-4937431)
chr7 (18-357)||(17721472-17721811)
chr7 (22-334)||(29968815-29969127)
chr7 (46-140)||(45993441-45993535)
chr7 (18-106)||(11276463-11276551)
chr7 (67-140)||(13440944-13441017)
chr7 (43-143)||(4078134-4078234)
chr7 (283-338)||(28739843-28739898)
chr7 (64-143)||(34232584-34232663)
chr7 (18-86)||(22818952-22819020)
chr7 (67-143)||(43572427-43572503)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-334)||(4089-4405)
[»] scaffold1137 (1 HSPs)
scaffold1137 (166-357)||(593-784)
[»] scaffold0179 (2 HSPs)
scaffold0179 (88-143)||(8439-8494)
scaffold0179 (88-143)||(13373-13428)
[»] scaffold0112 (1 HSPs)
scaffold0112 (275-305)||(14677-14707)
[»] scaffold0746 (1 HSPs)
scaffold0746 (283-324)||(1953-1994)
[»] scaffold0070 (1 HSPs)
scaffold0070 (283-324)||(27208-27249)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 27796321 - 27796666
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27796321 aagtgcatagacaggaagtgcagtcaggacgaatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 27796420  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  27796421 atacgattaacaacaggctcccaaaataataaccggcgcggatcacc-ccaatcggaaggcccaaatagaggaacgaaatttttcccactttgcaaccca 27796519  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27796520 acacagaagctgcttcagacaaccaagaggcattagtattcacccccaccagagagcttttatggaaatttaccttcaaacccgacatagcctcaaacaa 27796619  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27796620 aaccaaaccagccctcaaagcgcgaacatttgcccaacttttcttcc 27796666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 33170499 - 33170834
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| || ||||||||||||||| |||||||||| || |  ||  |||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  33170499 gcatagacaggtagtgcagtcaggacaaatttgagaaggatcaaccggtcaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaattc 33170598  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    | |||||||  ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| || | ||| ||||||||||||||  ||||    
T  33170599 gtttaacaattggctcccaaaacaataaccggcgcggatcgcccccaatcggaagacccaaatagaggaatggtactttacccactttgcaacctaacac 33170698  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    |||||| ||| ||| ||||||||| ||||||||||| |  || || |||||| |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  33170699 agaagccgctccagccaaccaagaagcattgatattgataccaaccagagagcttttatggaaatttactttcaaaccggacatagcctcaaacagaacc 33170798  T
Q  322 aaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    |||||| ||||||  || |||||||| |||||||||    
T  33170799 aaaccagccctcattgcacgaacattggcccaactt 33170834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 25856742 - 25856403
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||  ||||| | |||||||||||| ||||| |  ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  25856742 aagtgcatagacaggaatcgcagttaagacagatttgagcagaatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 25856643  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||| || || ||||||| ||| ||||||||||| |||     
T  25856642 atacgtttaacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcacccca 25856543  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||||| || || ||||||||||| ||| |||| || || ||||| || |||||| ||||||| ||||| || |||||||| |||||||| ||||||||    
T  25856542 acacagaggccgcctcagacaaccacgagacattaatgttgaccccaaccagagagcttttatgaaaattaactttcaaaccagacatagcttcaaacaa 25856443  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| |||||||||| ||||||||||||||||||    
T  25856442 aacgagaccagccctcaaagcacgaacatttgcccaactt 25856403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 33385276 - 33384937
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| || |  ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  33385276 aagtgcatagacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 33385177  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||| || ||||||||||| ||||| ||| ||| ||| ||||||||||| |||     
T  33385176 atacgattaacaataggctcccaaaataataaccggctcggattacctcctattggaaggcccaagtagagaaacagaactttacccactttgcacccca 33385077  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| || ||||||||||||||| |||| ||||| ||||| |  |||||| ||||||||||||| |  ||||| |  |||||||| ||||||||    
T  33385076 acacagaagccgcctcagacaaccaagagacattaatattgaccccaatcagagagcttttatggaaattgattttcaatctagacatagcttcaaacaa 33384977  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| |||||||||| | |||||| |||||||||    
T  33384976 aacgagaccagccctcaaagcacaaacattagcccaactt 33384937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 28534979 - 28534640
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || |||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  28534979 aagtgcatagacaggtagagcagtcaggacggacttaagaagaatcaaacgaccaccaaaagaaaggaaccgactttgccaacctgacaatctattttta 28534880  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| || |||||||  || ||||||||||| ||||| ||||| || ||||||||||||     
T  28534879 atacgattaacaacaggttcccaaaacaataatcgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaaccca 28534780  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||| ||||| ||||| |||||||| ||  || | |||||  |||| || | |||  | ||||| || || || ||||| ||||||||||| ||||||||    
T  28534779 acacggaagccgcttctgacaaccacgaaccagtaatattatcccctaccaaagaactcttatgaaagttaactttcaatcccgacatagcttcaaacaa 28534680  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||  | |||| ||||||  || || ||||| |||||||||    
T  28534679 aatgagaccagccctcagcgcccgcacattagcccaactt 28534640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 42514557 - 42514873
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  42514557 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 42514656  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  42514657 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 42514756  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||  ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  42514757 acacagaagccgcttctgacaaccacgaatcataaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 42514856  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  42514857 aactagaccagccctca 42514873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 23239220 - 23239557
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || ||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  23239220 aagtgcatagacaggtagagcagtcaggacggactttagaagaatcgaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 23239319  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
     ||||||| |||||||| |||||||| || |  || || |||||||| ||  |||  || ||||||||||| ||||| |||||  | |||||||| |||     
T  23239320 gtacgattcacaacaggttcccaaaacaaaagtcgacgtggatcaccccc--tcgagagccccaaatagagaaacgggattttaactactttgcacccca 23239417  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| || || || ||||| ||||||||||| |||||||     
T  23239418 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaagttaactttcaatcccgacatagcttcaaacat 23239517  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| ||||||  || || ||||| |||||||||    
T  23239518 aacaagaccagccctcagcgcccgcacattagcccaactt 23239557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 114 - 317
Target Start/End: Complemental strand, 27165301 - 27165099
Alignment:
Q  114 tttaatacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaa 213  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||  | ||| ||||||||||||    
T  27165301 tttaattcgattaacaacatgctcccaaaataataaccgacgcggatcgcccccaatcgggaggcccaaatagaggaacgacactttacccactttgcaa 27165202  T
Q  214 ccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaa 313  Q
    ||| ||||| |||| |||| | |||||||||||||||| ||||| | ||| || | ||| ||||||||||| || || ||||  || |||||||||||||    
T  27165201 cccaacacataagccgcttaatacaaccaagaggcatttatattgatcccaaccaaaga-attttatggaagttgactttcaggccagacatagcctcaa 27165103  T
Q  314 acaa 317  Q
    ||||    
T  27165102 acaa 27165099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 30731617 - 30731278
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||| ||||||||||| | ||||||||||||||||| ||||    
T  30731617 aagtgcatagacaggtagagcagtcaggacggactttagtagaatcaaacgaccaccgaaagataggaaccgacttttccaaccagacaatctagattta 30731518  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  30731517 atacgatccaccacaggttcccaaaacaaaagtcgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 30731418  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||| ||  ||  |||| ||||| ||||| || || ||  | || || ||||| || ||||| ||||||||||| ||||||||    
T  30731417 acacagaagccgcttctgacagccgcgaatcattaatattaacccctaccagtgaactcttgtgaaaattaactttcaatcccgacatagcttcaaacaa 30731318  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
     || | |||| ||||||| || || ||||| |||||||||    
T  30731317 gacgagaccagccctcaacgcccgcacattagcccaactt 30731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 8299485 - 8299322
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||  ||||| | |||| ||||||| |||   || ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  8299485 aagtgcatagacaggaatcgcagttaagacaaatttgagcagatcaag-cgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 8299387  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaa 182  Q
    ||||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  8299386 atacgtttaacaataggcttccaaaataataaccggctcggattacctccaatcgggaggcccaa 8299322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 22094531 - 22094430
Alignment:
Q  39 agtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcc 138  Q
    ||||| ||||| |||||||||||  | | | ||||||||||| ||||| ||||||| |||||| |||| ||||| |||||||||||| |||||||| |||    
T  22094531 agtcaagacagctttgagaagaaccaaatggccaccaaaagagaggaaacgactattccaacccgacagtctagctttaatacgattcacaacaggatcc 22094432  T
Q  139 ca 140  Q
    ||    
T  22094431 ca 22094430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 1821324 - 1821431
Alignment:
Q  37 gcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgatt-aacaacaggc 135  Q
    ||||||| |||| | || |||||||| |  |||||||| || ||||| ||||   | |||||||||||||||||||||||||||||||| ||||||||||    
T  1821324 gcagtcatgacaaacttaagaagaatcaagcgaccaccgaaggaaagaaaccatttttgccaaccagacaatctagttttaatacgattaaacaacaggc 1821423  T
Q  136 tcccaaaa 143  Q
    || |||||    
T  1821424 tcgcaaaa 1821431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 36256616 - 36256737
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| || || || |||| |||||| || | |||||| |  ||||| ||||||||||| |||||||| ||||||| ||||| ||||| ||| ||||    
T  36256616 gcatagacaggtagcgcggtcaagacagactttaaaagaatcaagcgacctccaaaagaaagaaaccgactttgccaactagacagtctagattttatac 36256715  T
Q  122 gattaacaacaggctcccaaaa 143  Q
    | ||||| ||||| ||||||||    
T  36256716 ggttaaccacaggttcccaaaa 36256737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 30509277 - 30509201
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    |||||||||||||| || ||||| |||| ||| || |||||||||| |||||||||||| || ||||| ||||||||    
T  30509277 cgaccaccaaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacaggatcccaaaa 30509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 30549620 - 30549544
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    |||||||||||||| || ||||| |||| ||| || |||||||||| |||||||||||| || ||||| ||||||||    
T  30549620 cgaccaccaaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacaggatcccaaaa 30549544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 20207953 - 20207898
Alignment:
Q  88 cgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| ||| ||||||||    
T  20207953 cgactattccaaccagacaacctagttttaatgcgattcacaataggttcccaaaa 20207898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 35983094 - 35983036
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaa 76  Q
    |||||||||||| || || |||||||||||||| || |||||||| | |||||||||||    
T  35983094 aagtgcatagacaggtagagcagtcaggacagacttaagaagaatcaaacgaccaccaa 35983036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 26263255 - 26263179
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||||||||||||| || || || | ||||||||||| |||| ||||||| || || | ||||| |||||||||    
T  26263255 cgaccaccaaaagaaagaaagcggctcttccaaccagacattctatttttaatgcggttcaaaacagactcccaaaa 26263179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 13878790 - 13878444
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13878790 aagtgcatagacaggaagtgcagtcaggacgaatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatcgagtttta 13878691  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13878690 atacgattaacaacaggctcccaaaataataaccggcgcggatcacccccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccca 13878591  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13878590 acaccgaagctgcttcagacaaccaagaggcattaatattcacccccaccagagagcttttgtggaaatttaccttcaaacccgacatagcctcaaacaa 13878491  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  13878490 aaccaaaccagccctcaaagcgcgaacatttgcccagcttttcttcc 13878444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 20825137 - 20825476
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| ||||||| |||| ||||||| ||||| |  ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  20825137 aagtgcatagacaggaagcgcagtcaagacatatttgagcagaatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 20825236  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||| || || || |||| ||| ||||||||||| |||     
T  20825237 atacgtttaacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaatggaactttacccactttgcacccca 20825336  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| || ||||||||||| ||| |||| || || ||||| || |||||| ||||||| ||||| || |||||| | |||||||| |||||| |    
T  20825337 acacagaagccgcctcagacaaccacgagacattaatgttgaccccaaccagagagcttttatgaaaattgactttcaaatcagacatagcttcaaacta 20825436  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| |||||||||| |||||||| |||||||||    
T  20825437 aacgagaccagccctcaaagcacgaacattcgcccaactt 20825476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 10530497 - 10530796
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||||||| || | ||| ||||| ||||| || || ||||| ||||| ||  |||||||||||| |||||||||||||||| |||||||||||| ||||    
T  10530497 aagtgcataaacagaaagagcagttaggacggactttagaaggattaggcggtcaccaaaagaaatgaaccgactatgccaagcagacaatctagattta 10530596  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||| | |||||||||||| ||||| |||||| |  ||||| |||||||||||||||||||||  | ||| |||| |||| |||||     
T  10530597 attcgattaacaacaggtttccaaaataataatcggcgaggatcatcgtcaatcagaaggcccaaatagaggaacgatactttacccaatttgtaaccca 10530696  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| |||||||  |||| || ||||  || |||||||||||||||||    
T  10530697 acacagaagctgcttcagacaaccaagaggcattaatattgacccctaccagagagcttttatgataattaactttcaggccagacatagcctcaaacaa 10530796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 7925223 - 7925558
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| |||||||||||   ||||||||||||||||| ||||    
T  7925223 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgacttgnccaaccagacaatctagattta 7925322  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||  ||||| || |||||||| |||     
T  7925323 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgagattttacctactttgcagccca 7925422  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  7925423 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 7925522  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgccca 353  Q
    ||| | |||| ||||||| || || ||||| |||||    
T  7925523 aactagaccagccctcaacgcccgcacattagccca 7925558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 32267391 - 32267707
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||| ||| || ||  ||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  32267391 aagtgcatagacaggtagagcagtcatgacggacttttgaagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 32267490  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| || |||||||| |||||||| || |  || || |||||||| |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  32267491 atacggttcacaacaggttcccaaaacaaaagtcgacgtggatcacccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 32267590  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||| ||||||||||| |||||||     
T  32267591 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaatcccgacatagcttcaaacag 32267690  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  32267691 aacaagaccagccctca 32267707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 37 - 320
Target Start/End: Complemental strand, 41664652 - 41664369
Alignment:
Q  37 gcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggct 136  Q
    ||||||||||| || || || ||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |    
T  41664652 gcagtcaggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgattcacaacaggtt 41664553  T
Q  137 cccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcaga 236  Q
    ||||||| || |  || ||||||||||| |||||||  || ||||||||||| ||| | ||||| || |||||||||||| ||| |||||| ||||| ||    
T  41664552 cccaaaacaaaagacgacgcggatcacccccaatcgagagccccaaatagagaaacaggattttacctactttgcaacccaacatagaagccgcttctga 41664453  T
Q  237 caaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaac 320  Q
    |||||| ||  |||| ||||| ||||| || |||||  | ||||| || ||||| ||||| ||||||||||| |||||||||||    
T  41664452 caaccacgaatcattaatattaacccctaccagagaactcttatgaaagtttactttcaatcccgacatagcttcaaacaaaac 41664369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 9923438 - 9923777
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||| |||||| || || ||||||| ||| || || |||||||  | ||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  9923438 aagtgtatagacaggtagagcagtcaagacggacttaagaagaaccaaacgaccaccaaaagaaaggaatcgactttgccaaccagacaatctattttta 9923537  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||| |||||||| ||||| || |||||||| || |||||||  || ||||| ||||| ||| | ||||| || ||||||||||||     
T  9923538 atgcgattaacaacaggttcccaaaacaataatcgacgcggatcgcccccaatcgagagccccaagtagagaaactggattttacctactttgcaaccca 9923637  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||| ||||| ||||  |||||||| ||  || | ||||| ||||| || | |||  | ||||| ||||| || ||||| ||||||||||| ||||||||    
T  9923638 acacggaagccgcttttgacaaccacgaaccagtaatattaacccctaccaaagaactcttatgaaaattaactttcaatcccgacatagcttcaaacaa 9923737  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||  |  ||| ||||||| || || ||||| |||||||||    
T  9923738 aatgagtccagccctcaacgcccgcacattagcccaactt 9923777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 8300640 - 8300956
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || |||||||| | ||| ||||| || ||||| |||||||| |||||||||| |||||||| ||||    
T  8300640 aagtgcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccaccgaaggaaagaaaccgactttgccaaccagccaatctagattta 8300739  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| || |||||||  |||||||| || |  || || ||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  8300740 atacggttcacaacagcttcccaaaacaaaagtcgacgaggatcgccgccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 8300839  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||||| || ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||| ||||||||||| |||||||     
T  8300840 acacagatgccgcttctgacaaccacgaatcattaatattgacccctaccagagaactcttatgaaaattaactttcaatcccgacatagcttcaaacag 8300939  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  8300940 aacaagaccagccctca 8300956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 17700317 - 17700453
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| || |  ||||||||||| ||| || ||| ||||||||||||| |||||||||  ||     
T  17700317 aagtgcatagacaggaagcgcagtcaagacagatttgagaagtatcaatcgaccaccaaaggaatggtacctactatgccaaccaaacaatctagacttt 17700416  T
Q  118 atacgattaacaacaggctcccaaaataataaccggc 154  Q
    ||||||||||||| |||||||||||||||||||||||    
T  17700417 atacgattaacaataggctcccaaaataataaccggc 17700453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 14345198 - 14345099
Alignment:
Q  43 aggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaa 142  Q
    |||||||| ||||| ||| | ||||| ||||| ||||||| ||| |||||||| |||||||||||||||| |||||| |||||||||| ||| |||||||    
T  14345198 aggacagacttgaggagagtaagacgtccaccgaaagaaatgaagcgactatgacaaccagacaatctagatttaatgcgattaacaataggatcccaaa 14345099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 42176860 - 42176767
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatcta 111  Q
    |||||||||||| ||||| || |||| |||  ||||||| ||||| |||||||||| ||| |||||||||||||||| || |||||||||||||    
T  42176860 aagtgcatagacaggaagcgctgtcaagacgaatttgagtagaatcagacgaccactaaaggaaaggaaccgactatacctaccagacaatcta 42176767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 4987340 - 4987246
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||||||||||  | ||| ||||||||||||||||| ||||||| |||||| |||| ||||| ||| | |||||| |||||||| |||||    
T  4987340 acagatttgagaagaaccaaacggccaccaaaagaaaggaaacgactattccaacctgacagtctagattttacacgattcacaacagggtccca 4987246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 16375384 - 16375284
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| ||||||  ||| ||||| ||||||||| || |||| ||| ||||    
T  16375384 gtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacctaacagtctagatttaatacggttcacaataggttccc 16375285  T
Q  140 a 140  Q
    |    
T  16375284 a 16375284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 36493483 - 36493524
Alignment:
Q  283 aaatttaccttcaaacccgacatagcctcaaacaaaaccaaa 324  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  36493483 aaatttactttcaaaccagacatagcctcaaacaagaccaaa 36493524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 48312931 - 48313277
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48312931 aagtgcatagacaggaagtgcagtcatgacgaatttgagaagaattagacgacgaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 48313030  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  48313031 atacaattaacaacaggcttccaaaataataaccggcgcgaatcacccccaatcggaaggcccaaatagaggaacggaattttttccactttgcaaccca 48313130  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48313131 acacagaagctgcttcagacaaccaagaggcattaatattcacccccaccagagagcttttatggaaatttaccttcaaacccgacatagcctcaaacaa 48313230  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
    |||||||||| || |||||||||||||||| ||||||||| ||||||    
T  48313231 aaccaaaccagccttcaaagcgcgaacattagcccaacttttcttcc 48313277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 19733287 - 19732990
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| ||||| ||||||||||||||||||||||| || |  |||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |    
T  19733287 gcatagacaggaagggcagtcaggacagatttgagaaggatcaatcgaccaccaaaagaaaggaaccgactatgctaaccaaacaatctagctttaattc 19733188  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    |||||||| ||||||||||||| |||||||| ||| |||| || ||||||||||| ||||||||||||||||  | ||| |||||||||| |||  ||||    
T  19733187 gattaaca-caggctcccaaaacaataaccgacgccgatcgcccccaatcggaagacccaaatagaggaacgacactttacccactttgcgacctaacac 19733089  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaac 320  Q
    |||||| |||||||||||||| ||  |||||||||| || || || |  ||| |||||||||||||||| |||||||| ||||||||||||||||||||    
T  19733088 agaagccgcttcagacaaccatgaaacattgatattgacaccaaccattgagcttttatggaaatttactttcaaaccagacatagcctcaaacaaaac 19732990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 287
Target Start/End: Complemental strand, 55724985 - 55724741
Alignment:
Q  43 aggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaa 142  Q
    ||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  55724985 aggacggatttgagaagaatcaggcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaataacaggcttccaaa 55724886  T
Q  143 ataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcagacaacca 242  Q
    |||||||||| |||||||| |||||||||||||  ||||||||||| ||| ||| ||| |||| ||||||||||  ||||||||| |||||||||| |||    
T  55724885 ataataaccgacgcggatcgcctccaatcggaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 55724786  T
Q  243 agaggcattgatattcacccccacgagagagattttatggaaatt 287  Q
    ||||||||| ||||| | ||| || |||||| |||||||||||||    
T  55724785 agaggcattaatattgatcccaaccagagagcttttatggaaatt 55724741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 19756104 - 19756406
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  19756104 aagtgcatagacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 19756203  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||| |||||||| |||||||| || |  |  ||||||||||| |||||||  || ||||||||||| ||||||||||| || ||||||||||||     
T  19756204 atacgattcacaacaggttcccaaaacaaaagacaacgcggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcaaccca 19756303  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||| | || |||||  | ||||| || ||||| ||||| ||||||||||| ||||||||    
T  19756304 acacagaagccgcttctgacaaccacgaatcattaatattaaccactaccagagaactcttatgaaagtttactttcaatcccgacatagcttcaaacaa 19756403  T
Q  318 aac 320  Q
    |||    
T  19756404 aac 19756406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 19783702 - 19783400
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  19783702 aagtgcatagacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 19783603  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||| |||||||| |||||||| || |  |  ||||||||||| |||||||  || ||||||||||| ||||||||||| || ||||||||||||     
T  19783602 atacgattcacaacaggttcccaaaacaaaagacaacgcggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcaaccca 19783503  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||| | || |||||  | ||||| || ||||| ||||| ||||||||||| ||||||||    
T  19783502 acacagaagccgcttctgacaaccacgaatcattaatattaaccactaccagagaactcttatgaaagtttactttcaatcccgacatagcttcaaacaa 19783403  T
Q  318 aac 320  Q
    |||    
T  19783402 aac 19783400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 23641894 - 23641578
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  23641894 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 23641795  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  23641794 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 23641695  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  23641694 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 23641595  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  23641594 aactagaccagccctca 23641578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 1827843 - 1827508
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| ||||||||||| || || |||||||| | ||| ||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  1827843 aagtgcatagacaggaagagcagtcaggacggactttagaagaatcaaacggccaccgaaagagaggaaccgactttgccaaccagacaatctagattta 1827744  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||| |||| ||| |||||||| || |  || || |||||||| ||||| |  || ||||||||||| ||||  ||||| || ||||||||||||     
T  1827743 atacgattcacaataggttcccaaaacaaaatacgacgtggatcacccccaattgagagccccaaatagagaaacgagattttacctactttgcaaccca 1827644  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||||| || ||||| |||||||| ||  |||| ||||| ||||| || |||||| | ||||| ||||| ||||||||||||||||| || ||||||||    
T  1827643 acacagaggccgcttctgacaaccacgaatcattaatattaacccctaccagagagctcttatgaaaattaaccttcaaacccgacatggcttcaaacaa 1827544  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgccca 353  Q
     || | |||| ||||||| || || ||||| |||||    
T  1827543 cacaagaccagccctcaacgcccgcacattagccca 1827508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 47419642 - 47419976
Alignment:
Q  19 agtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaa 118  Q
    ||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||    
T  47419642 agtgcatagacagggagagcagtcaggaccgactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaa 47419741  T
Q  119 tacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaacccta 218  Q
    ||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| ||| |    
T  47419742 tacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttgcctactttgcaccccaa 47419841  T
Q  219 cacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaa 318  Q
    ||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| |||||||||    
T  47419842 cacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaaa 47419941  T
Q  319 accaaaccaaccctcaaagcgcgaacatttgccca 353  Q
    || | |||| ||||||| || || ||||| |||||    
T  47419942 actagaccagccctcaacgcccgcacattagccca 47419976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 23647552 - 23647236
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | | ||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  23647552 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaatgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 23647453  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |   | |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  23647452 atacgatccaccacaggttcccaaaacaaaagatgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 23647353  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  23647352 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 23647253  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  23647252 aactagaccagccctca 23647236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 31 - 353
Target Start/End: Complemental strand, 11586473 - 11586152
Alignment:
Q  31 ggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaa 130  Q
    ||||||| |||||||||| |||| ||||| ||||| |||||||||||||||||||||||||| | ||| | ||||| ||||| |||||| ||||||||||    
T  11586473 ggaagtgtagtcaggacaaattttagaaggattaggcgaccaccaaaagaaaggaaccgactcttccatctagacagtctagatttaattcgattaacaa 11586374  T
Q  131 caggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgc 230  Q
    |||| |||||||||||||| ||||  ||||||    ||||| |||||||||||||||||||| | |  || |||| |||||||||| | |||| ||| ||    
T  11586373 caggttcccaaaataataaacggcaaggatcagacgcaatctgaaggcccaaatagaggaacagta-cttacccaatttgcaacccaaaacaggagccgc 11586275  T
Q  231 ttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaaaccaacc 330  Q
    || || ||||||||||||||| || || ||||| || |||||| |||| ||  |||| |  ||||  || ||||||||||||||||| || | |||| ||    
T  11586274 tttagtcaaccaagaggcattaatgttgacccctaccagagagcttttgtgataattaattttcaggccagacatagcctcaaacaacacaagaccagcc 11586175  T
Q  331 ctcaaagcgcgaacatttgccca 353  Q
    ||||| || |||||||| |||||    
T  11586174 ctcaatgcacgaacattagccca 11586152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 29553100 - 29552979
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| || || | ||||| ||||| |||||||||||  | ||||||||||||||||||||| | ||||| |||||| |||| ||||||| ||||||    
T  29553100 gcatagacaggcagagaagtcaagacagctttgagaagaaccaaacgaccaccaaaagaaaggaaacaactattccaacccgacagtctagttctaatac 29553001  T
Q  122 gattaacaacaggctcccaaaa 143  Q
    |||| |||| ||| ||||||||    
T  29553000 gattcacaataggatcccaaaa 29552979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 55299458 - 55299580
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| |||||| |||||||||| ||||    
T  55299458 aagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacaatctagattta 55299557  T
Q  118 atacgattaacaacaggctccca 140  Q
    |||||||| |||| ||| |||||    
T  55299558 atacgattcacaataggttccca 55299580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 8935939 - 8936033
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||||||||||  | ||| | ||||||||| ||||| ||||||| |||||| |||| ||||||||| |||||||| |||||||| |||||    
T  8935939 acagatttgagaagaaccaaacggcaaccaaaagagaggaaacgactattccaacctgacagtctagtttttatacgattcacaacagggtccca 8936033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 23872780 - 23872658
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| ||||    
T  23872780 aagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagattta 23872681  T
Q  118 atacgattaacaacaggctccca 140  Q
    |||||||| |||| ||| |||||    
T  23872680 atacgattcacaataggttccca 23872658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 19648560 - 19648654
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||||||||||  | ||| ||| ||||||| ||||| ||||||| |||||| |||| ||||| ||| |||||||| |||||||| |||||    
T  19648560 acagatttgagaagaaccaaacggccagcaaaagagaggaaacgactattccaacctgacactctagattttatacgattcacaacagggtccca 19648654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 40688937 - 40689043
Alignment:
Q  37 gcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggct 136  Q
    ||||||| |||||| || | |||||| |  ||||| ||||||||||| |||||||| ||||||| ||||| ||||| ||| ||||| ||||| ||||| |    
T  40688937 gcagtcaagacagactttaaaagaatcaagcgacctccaaaagaaagaaaccgactttgccaactagacagtctagattttatacggttaaccacaggtt 40689036  T
Q  137 cccaaaa 143  Q
    |||||||    
T  40689037 cccaaaa 40689043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 20675872 - 20675984
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||  |  |||||||||||||| |  ||||||||||  ||||| |||| ||||| ||||    
T  20675872 aagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagaaaaaccgactattacaacccgacagtctagattta 20675971  T
Q  118 atacgattaacaa 130  Q
    |||||||| ||||    
T  20675972 atacgattcacaa 20675984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 2365891 - 2365945
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||||||||| || || ||||| | ||||||||||||||||| ||||||||    
T  2365891 cgaccaccaaaagacagaaaacgactcttccaaccagacaatctagatttaatac 2365945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 19115273 - 19115395
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| |  || | ||||| ||||| |||||||||||  |  || ||||||||||| ||||| ||||||| |||||| |||| || || ||||    
T  19115273 aagtgcatagacagacagagaagtcaagacagctttgagaagaaccaagcggccaccaaaagagaggaaacgactattccaacccgacagtcgagcttta 19115372  T
Q  118 atacgattaacaacaggctccca 140  Q
    | |||||| |||| ||| |||||    
T  19115373 acacgattcacaataggatccca 19115395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 48569326 - 48568980
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  48569326 aagtgcatagacaggaagtgcagtcaggacggatttgagaagaatcaaacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagatttt 48569227  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||||| ||     
T  48569226 atacgattaacaacaggctcccaaaataataatcggcgcggatcaccctcaatcggaaggcccaaatagaggaacgaaattttacccactttgcaatcca 48569127  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||| |||||||| ||||| |||||||||||    
T  48569126 acacagaagccgcttcagacaaccaagaggcattaatattcacccccactagagagcttttatgaaaatttactttcaaaccagacatcgcctcaaacaa 48569027  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
    ||| | |||| | |||||||  |||||||| ||||||||| ||||||    
T  48569026 aacaagaccaccactcaaagtacgaacattagcccaacttttcttcc 48568980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 357
Target Start/End: Complemental strand, 962462 - 962127
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| ||||||||||||||||||||||||||||| || |  || ||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  962462 gcatagacaggaagtgcagtcaggacagatttgagaaggatcaaccggccaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaattc 962363  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    | |||||||| |||||| |||| ||||||||||||||||| || |||||| |||| ||||||||||||||||| | ||| ||||||||||||||  ||||    
T  962362 gtttaacaactggctcctaaaacaataaccggcgcggatcgcccccaatctgaagacccaaatagaggaacggtactttacccactttgcaacctaacac 962263  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    |||||| ||||||| ||||||||| ||||||||||| || || || |||||| |||||||||||||||| |||||||| |||||||||||||| | ||||    
T  962262 agaagccgcttcagccaaccaagaagcattgatattgacaccaaccagagagcttttatggaaatttactttcaaaccggacatagcctcaaatagaacc 962163  T
Q  322 aaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    |||||| ||||||  || |||||||| |||||||||    
T  962162 aaaccagccctcattgcacgaacattggcccaactt 962127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 19891514 - 19891853
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||| |||| || ||||| ||||||| |||||||||||| ||||| ||  |||||| ||| |||||||||||||||||| ||||||||||||||| ||||    
T  19891514 aagttcataaacaggaagcgcagtcaagacagatttgagtagaatcaggtgaccactaaaggaaaggaaccgactatgctaaccagacaatctagattta 19891613  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||| ||||||| ||| |||||||||||||||     
T  19891614 atacgattaacaataggctcccaaaataataaccagcgtggatcgcccccaatcggaaggcccaaatagagaaacggaactttacccactttgcaaccca 19891713  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| || ||||| ||  ||||||||||||||||    
T  19891714 acacagaagccgcttcagacaaccaagaggcattaatattgaccccaacgagagagcttttatggaaattgactttcaatccaaacatagcctcaaacaa 19891813  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||||||||||| |  || ||||| |||||||||    
T  19891814 aactagaccaaccctcaacgaacgtacattagcccaactt 19891853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 16179777 - 16180086
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||||||| |||||||||||||||||||  | |  | ||||||||| ||||||||| |||||||||||| ||||||||||| ||||    
T  16179777 aagtgcatagacaggaagtgcaatcaggacagatttgagaagggtcaacctaccaccaaaggaaaggaactgactatgccaactagacaatctagattta 16179876  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||| ||||  | ||| |||||||||||||||     
T  16179877 attcgattaacaacaggctcccaaattaataaccgtcgcggatcgcctccaatcggaagacccaaatagagaaacgacactttacccactttgcaaccca 16179976  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||||||||||||||||||||| ||||| || || || |||||  |||||||||||||||| ||||| || |||||||||||||||||    
T  16179977 acacagaagccgcttcagacaaccaagaggcattaatattgacaccaactagagaacttttatggaaatttactttcaagcctgacatagcctcaaacaa 16180076  T
Q  318 aaccaaacca 327  Q
    ||||||||||    
T  16180077 aaccaaacca 16180086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 17077600 - 17077297
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||||||||||  |||||||| | |||||| |||||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17077600 aagtgcatagacatgaagtgcaattaggacaaatttgagaaggatcaaacgaccactaaaagaaaggaaccgactatgccaaccagacaatctagtttta 17077501  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||||| |||||||||||||||||||  ||  |||||||||| ||| ||||||||||||||||  | ||| |||||||||||||||     
T  17077500 attcgattaacaacaggcttccaaaataataaccggcgcaaattgcctccaatcgaaagacccaaatagaggaacgacactttacccactttgcaaccca 17077401  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||  ||||||||||||||| ||||| || |||||||||||||||||    
T  17077400 acacagaagccgcttcagacaaccaagaggcattaatattgaccccgaccagagag-ctttatggaaatttactttcaagccagacatagcctcaaacaa 17077302  T
Q  318 aacca 322  Q
    |||||    
T  17077301 aacca 17077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 34332118 - 34331779
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || || ||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  34332118 aagtgcatagacaggtagagcagtcaggacagactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 34332019  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||| |||||||| |||||||| || |  || ||||||||||  |||||||  || ||||||||||| ||||| ||||| || ||||||||||||     
T  34332018 atacgattcacaacaggttcccaaaacaaaagtcgacgcggatcacacccaatcgagagccccaaatagagaaacgggattttacctactttgcaaccca 34331919  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| || ||||| ||||| ||| ||||||| ||||||||    
T  34331918 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaagtttactttcaatcccaacatagcttcaaacaa 34331819  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| ||||||  || || ||||| |||||||||    
T  34331818 aacaagaccagccctcagcgcccgcacattagcccaactt 34331779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 2365115 - 2365431
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  2365115 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 2365214  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |   | |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  2365215 atacgatccaccacaggttcccaaaacaaaagatgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 2365314  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  2365315 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 2365414  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  2365415 aactagaccagccctca 2365431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 12341558 - 12341370
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||| |||||| ||||| ||||||| ||||||||||||||| || |  ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  12341558 aagtgtatagacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 12341459  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccac 206  Q
    ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||| || || ||||||| ||| |||||    
T  12341458 atatgattaacaataggctcccaaaataataaccggcgcggattacctccaatcgagaggcccaagtatagaaacggaactttacccac 12341370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 19919532 - 19919197
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||| |||||  | || || ||||| | ||||||||| ||||| || |||||||| ||||||||||||||||||| ||||    
T  19919532 aagtgcatagacaggtagagcagttaggacgaactttagtagaatcaaacgaccaccgaaagatagaaaccgactttgccaaccagacaatctagattta 19919433  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||| || |||| |||||| ||||| ||||| || ||||| || |||     
T  19919432 atacgatctaccacaggttcccaaaacaaaagtcgacgcggatcgcccccaatcgggagtcccatatagagaaacgggattttacctactttacacccca 19919333  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||| ||| ||  |||| ||||| ||||| || || ||  | || || ||||| || ||||| |||||||| || || |||||    
T  19919332 acacagaagccgcttctgacagccacgactcattaatattaacccctaccagtgaactcttgtgaaaattaactttcaatcccgacatggcttcgaacaa 19919233  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgccca 353  Q
     || | |||| ||||||| || || ||||| |||||    
T  19919232 gacgagaccagccctcaacgcccgcacattagccca 19919197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 12334205 - 12334052
Alignment:
Q  204 cactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgac 303  Q
    ||||||||| ||| |||||||||| || | ||||||||||||| || | || || ||||| || |||||| ||||||||||||| || ||||| || |||    
T  12334205 cactttgcaccccaacacagaagccgccttagacaaccaagagacactaatgttgaccccaaccagagagcttttatggaaattaactttcaatccagac 12334106  T
Q  304 atagcctcaaacaaaaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||||| ||||||||||| | |||| |||||||||| |||||||| |||||||||    
T  12334105 atagcttcaaacaaaacgagaccagccctcaaagcacgaacattagcccaactt 12334052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 15313203 - 15313319
Alignment:
Q  203 ccactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccga 302  Q
    |||||||| ||||| | | |||| | ||||||||||||||||||||||| ||||| ||||| || |||| | |||||||||||||||| ||||| ||  |    
T  15313203 ccactttgtaacccaatatagaatccgcttcagacaaccaagaggcattaatattgaccccaaccagagggcttttatggaaatttactttcaagccaaa 15313302  T
Q  303 catagcctcaaacaaaa 319  Q
    |||||||| ||| ||||    
T  15313303 catagccttaaaaaaaa 15313319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 6175780 - 6175668
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| ||||    
T  6175780 aagtgcatagacaggcagagatgtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagattta 6175681  T
Q  118 atacgattaacaa 130  Q
    ||| |||| ||||    
T  6175680 atatgattcacaa 6175668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 43120955 - 43120852
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    |||||||||||||| | |||||  || ||||| |||||||| | ||| ||||||| ||||||||||| ||||  ||||||  |||| |||| ||| ||||    
T  43120955 gtcaggacagattttaaaagaaccaggcgaccgccaaaagataagaaacgactattccaaccagacagtctaaatttaatctgattcacaataggatccc 43120856  T
Q  140 aaaa 143  Q
    ||||    
T  43120855 aaaa 43120852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 19876080 - 19876182
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| | |||||||||||| || |||||||  |  ||||| || ||||| || || | ||| ||||| || |||||||||||||||    
T  19876080 aagtgcatagacaggaagcgaagtcaggacagacttaagaagaaccaagcgacccccgaaagatagaaaacaactttgccaccccgacaatctagtttta 19876179  T
Q  118 ata 120  Q
    |||    
T  19876180 ata 19876182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 46907714 - 46907681
Alignment:
Q  277 ttatggaaatttaccttcaaacccgacatagcct 310  Q
    ||||| ||||||||||||||||||||||||||||    
T  46907714 ttatgaaaatttaccttcaaacccgacatagcct 46907681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 23819451 - 23819527
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    |||||||||||||| | ||| ||||||| |||||||||||| |||  |||||| ||||| |||| | | ||||||||    
T  23819451 cgaccaccaaaagataagaaacgactattccaaccagacaacctaactttaatccgattcacaataagatcccaaaa 23819527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 52250171 - 52250123
Alignment:
Q  275 ttttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaa 323  Q
    ||||||| ||||| || |||||||| ||||||||||||||||| |||||    
T  52250171 ttttatgaaaattgactttcaaaccagacatagcctcaaacaacaccaa 52250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 33515496 - 33515150
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||     
T  33515496 aagtgcatagacaggaagtgcagtcaggacggatttgcgaagaatcagacgactaccaaaagaaaggaaccgactatgccaaccagacaatctagatttt 33515397  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||     
T  33515396 atacgattaacagcatgctcccaaaataataaccggcgtggatcacccccaatcggaaggcccaaatagagaaacgaaattttacccactttgcaaccca 33515297  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||| ||||||  |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |||||||||||    
T  33515296 acatagaagcctcttcagacaaccaagaggcattaatattcacccccactagagagcttttatggaaatttactttcaaaccagacatcgcctcaaacaa 33515197  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
    ||| | |||  || ||||||| |||||||| ||||||||| ||||||    
T  33515196 aacaagaccggccttcaaagcacgaacattagcccaacttttcttcc 33515150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 28253566 - 28253912
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||||||||||  |||| ||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||| | |||||||||| ||||| ||||    
T  28253566 aagtgcatagacatgaagagcagtcaggacggacttgagaaggattaggcgaccaccaaaagagagaaaccgactacgacaaccagacagtctagattta 28253665  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||| | ||||||||||||||| || |  ||||| ||||||||||||||||||||||| ||||  | | | |||| ||| ||||||     
T  28253666 attcgattaacaacaggtttccaaaataataaccgacgagagtcacccccaatcggaaggcccaaatagagaaacgacactgtacccaatttacaaccca 28253765  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||  |||| ||||||| ||||||||| ||||| ||||| ||||| |  |  ||  |||||||  | || || |||||||| |||||||||||||||||    
T  28253766 acactaaagccgcttcagtcaaccaagaagcattaatattaacccctatcaacgaacttttatgatagttaactttcaaacctgacatagcctcaaacaa 28253865  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
     || | | || |||||||||| |||||||| ||||||||| ||||||    
T  28253866 gacgagagcagccctcaaagcacgaacattagcccaacttttcttcc 28253912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 12646391 - 12646517
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  12646391 gcatagacaggaagcgcagttaggacggatttgagaagaattaggcgaccaccaaaggagaggaaccgactatgccaacttgacaatctagatttaatac 12646490  T
Q  122 gattaacaacaggctcccaaaataata 148  Q
    |||||||||||| ||||||||||||||    
T  12646491 gattaacaacagactcccaaaataata 12646517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 13551441 - 13551541
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    ||||||||||||||||||||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| |||||||||||| |||| ||| ||||    
T  13551441 gtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacctgacagtctagatttaatacgattcacaataggttccc 13551540  T
Q  140 a 140  Q
    |    
T  13551541 a 13551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 2207086 - 2207000
Alignment:
Q  57 aagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    |||||| | |||||| ||||| ||||| |||||||| |||||||  |||| ||||| ||||||||| | ||| ||||||||||||||    
T  2207086 aagaatcaaacgacctccaaaggaaagaaaccgactttgccaactggacagtctagatttaatacggtgaaccacaggctcccaaaa 2207000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 28399831 - 28399746
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgatt 125  Q
    ||||| || ||||| || ||||| | ||| ||||||||||| || |||| |||||||||||| |||| ||||| |||||| |||||    
T  28399831 gtcagaactgattttaggagaatcaaacgtccaccaaaagagagaaacctactatgccaacccgacagtctagatttaatgcgatt 28399746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 314
Target Start/End: Complemental strand, 30204624 - 30204479
Alignment:
Q  169 atcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccacga 268  Q
    ||||||| | ||||||| ||||| || ||||| ||  |||||||||||  ||| || ||||| |||  |||||||||   | | ||||| |||||||| |    
T  30204624 atcggaacggccaaataaaggaaaggcattttcccacctttgcaacccagcacggacgctgcctcatgcaaccaagaattaataatattaacccccacta 30204525  T
Q  269 gagagattttatggaaatttaccttcaaacccgacatagcctcaaa 314  Q
    | || |||||||||||||| || ||||| || ||||| ||||||||    
T  30204524 gggaaattttatggaaattaactttcaatccggacatggcctcaaa 30204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 15018566 - 15018626
Alignment:
Q  70 ccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaa 130  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| || ||||| |||||| ||||    
T  15018566 ccaccaaaagagaggaaacgactattccaacccgacaatcgagctttaacacgattcacaa 15018626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 32191944 - 32192000
Alignment:
Q  69 accaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgatt 125  Q
    ||||||||||||||| || | ||| | ||||||||||||||||| |||||| |||||    
T  32191944 accaccaaaagaaagaaagcaactcttccaaccagacaatctagatttaatgcgatt 32192000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 385 - 720
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||    
T  385 gcatagacaggaagcgcagttaggacggatttgagaagaatcaggcgaccaccaaaggagaggaaccgactatgccaaccagaaaatctagatttaatac 484  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||| ||||    
T  485 gattaacaacaggctcccaaaataataaccgacgtggatcgcctccaatcggaagacccaaatagagaaacggaactttacccactttgcaacccaacac 584  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    |||||| ||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| || |||| ||| ||||||||||||||||| ||     
T  585 agaagccgcttcagacaaccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcagaccagacatagcctcaaacaacaca 684  T
Q  322 aaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    | |||| |||| ||||| |||||||| |||||||||    
T  685 agaccagcccttaaagcacgaacattagcccaactt 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 13938559 - 13938894
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||  ||||||||||||||||||||||||||||| || |  || |||||||||||||||||||||||||||| |||||||||||||| |||||| |    
T  13938559 gcatagataggaagtgcagtcaggacagatttgagaaggatcaatcggccaccaaaagaaaggaaccgactatgccgaccagacaatctagctttaattc 13938658  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    | |||||||| ||||||||||| ||||||||||| ||||| || ||||||| ||| ||||||||||||||||| | ||| ||||||||||||||  ||||    
T  13938659 gtttaacaactggctcccaaaacaataaccggcgtggatcgcccccaatcgaaagacccaaatagaggaacggtactttacccactttgcaacctaacac 13938758  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    || ||| ||||||| ||||||||| ||||||||||| || || || |||||| |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  13938759 aggagccgcttcagccaaccaagaagcattgatattgacaccaaccagagagcttttatggaaatttactttcaaaccagacatagcctcaaacagaacc 13938858  T
Q  322 aaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    |||||| ||||||  || |||||||| |||||||||    
T  13938859 aaaccagccctcattgcacgaacattggcccaactt 13938894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 21629425 - 21629086
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| || |  ||||||||||| |||||| ||| |||||||||||||||||||||||  ||     
T  21629425 aagtgcatagacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 21629326  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||| || || ||||||||||| ||||||||||| |||     
T  21629325 atacaattaacaataggctcccaaaataataaccggcgcggattacctctaatcgggaggcccaagtatagaaacggaattttacccactttgcacccca 21629226  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| || |||||||||||||||||||| || || ||||| || |||||| ||||||||||||| || ||||| || |||||||| ||||||||    
T  21629225 acacagaagccgcctcagacaaccaagaggcattaatgttgaccccaaccagagagcttttatggaaattaactttcaatccagacatagcttcaaacaa 21629126  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| |||||||||| |||||||| |||||||||    
T  21629125 aacgagaccagccctcaaagcacgaacattagcccaactt 21629086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 357
Target Start/End: Complemental strand, 17605633 - 17605298
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| ||||| ||||||| ||||||||||||||| || | |||||||||||| |||||| ||| | ||||||||| |||||||||||  || ||||    
T  17605633 gcatagacaggaagcgcagtcaagacagatttgagaagtatcaaacgaccaccaaaggaaaggtacctattatgccaactagacaatctagactttatac 17605534  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||| || || ||||||| ||| ||||||||||| ||| ||||    
T  17605533 gattaacaataggctcccaaaataataaacggcgcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcaccccaacac 17605434  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    |||||| || ||||||||||||||| |||| || || ||||| || |||||| ||||||||||||| || ||||| || |||||||| |||||||||||     
T  17605433 agaagccgcctcagacaaccaagagacattaatgttgaccccaaccagagagcttttatggaaattaactttcaatccagacatagcttcaaacaaaacg 17605334  T
Q  322 aaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    | |||| |||||||||  |||||||| |||||||||    
T  17605333 agaccagccctcaaagtacgaacattagcccaactt 17605298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 356
Target Start/End: Complemental strand, 18681870 - 18681539
Alignment:
Q  25 tagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgat 124  Q
    ||||| ||||||  |||||||||||||||||| || || | ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  18681870 tagacaggaagtctagtcaggacagatttgagcaggatcaaacgaccaccaaaataaaggaaccgactatgccaaccagtcaatctagctttaatacgat 18681771  T
Q  125 taacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacaga 224  Q
    || | | ||| ||||||||||| | |||| |||||||||| ||||||||||  |||| |||||| ||||  | ||| |||||||| |||||  |||||||    
T  18681770 tatcgataggatcccaaaataacacccggtgcggatcacccccaatcggaatacccatatagagaaacgatactttacccactttacaacctaacacaga 18681671  T
Q  225 agctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaaa 324  Q
    ||| ||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||||| || |||||||| | |||||||| ||||| | | |||    
T  18681670 agccgcttcagacaaccaagaagcattgatattgaccccaaccagagagcttttatggaaattaactttcaaaccaggcatagccttaaacagacctaaa 18681571  T
Q  325 ccaaccctcaaagcgcgaacatttgcccaact 356  Q
    ||| ||||||  || |||||||||||||||||    
T  18681570 ccagccctcattgcccgaacatttgcccaact 18681539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 364
Target Start/End: Complemental strand, 15956230 - 15955940
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaataataaccggcgcggatcacctc 166  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |    
T  15956230 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatatagttttaattcgattaacaacaggttcccaaaataataaccggcgcggatcacccc 15956131  T
Q  167 caatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccac 266  Q
    |       |||||||||||||||||||  | ||| |||| |||||||||| |||||||||  |||| |||||||||||||||||| ||||| ||||| ||    
T  15956130 c-------aggcccaaatagaggaacgacactttacccagtttgcaacccaacacagaagtcgcttaagacaaccaagaggcattaatattgacccctac 15956038  T
Q  267 gagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
     |||||| ||||||||||||| || ||||  || || ||||||||||||||||| | |||| ||||||| ||  ||||||| ||||| ||| ||||||    
T  15956037 cagagagcttttatggaaattaactttcaggccagatatagcctcaaacaaaacgagaccagccctcaatgcatgaacattagcccagcttttcttcc 15955940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 17577020 - 17576681
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    ||||| |||||| ||||| ||||||| |||||||||||| ||||| |  |||| |||||| |||||| ||| |||||||||||||||||||||||  ||     
T  17577020 aagtgaatagacaggaagcgcagtcaagacagatttgagcagaatcaagcgactaccaaaggaaaggtacctactatgccaaccagacaatctagacttt 17576921  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||| || || ||||||| ||| ||||||||||| |||     
T  17576920 atacgtttaacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcacccca 17576821  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||| |||||| || ||||||||||| | | |||| || || ||||| || |||||| ||||||| ||||| || |||||||| |||||||| ||| ||||    
T  17576820 acaaagaagccgcctcagacaaccacgggacattaatgttgaccccaaccagagagcttttatgaaaattgactttcaaaccagacatagcttcatacaa 17576721  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| |||||||||| ||||||||  ||||||||    
T  17576720 aacgagaccagccctcaaagcacgaacattctcccaactt 17576681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 357
Target Start/End: Complemental strand, 24766669 - 24766388
Alignment:
Q  76 aaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaa 175  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |  ||||||||||| ||||||   |    
T  24766669 aaagaaaggaaccgactttgccaaccagacaatctagttttaatacgattaacaacaggttcccaaaacaataatcaacgcggatcacccccaatcaaga 24766570  T
Q  176 ggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagat 275  Q
    | ||||||||||| ||||| ||||| || |||||||||||| ||| |||||| ||||| || ||||| ||  |||| ||||| ||||| || |||||  |    
T  24766569 gccccaaatagagaaacgggattttacctactttgcaacccaacatagaagccgcttctgaaaaccacgaatcattaatattaacccctaccagagaact 24766470  T
Q  276 tttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
     |||||||| ||||| |||||  |||||||||| ||||||||||| | |||| ||||||  || || ||||| |||||||||    
T  24766469 cttatggaagtttactttcaattccgacatagcttcaaacaaaacgagaccagccctcagtgcccgcacattagcccaactt 24766388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 2554442 - 2554780
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||  | || || ||||| | ||||||||| ||||||||||||||||| || |||||||||||||||| ||||    
T  2554442 aagtgcatagacaggtagagcagtcaggacgaactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgtcaaccagacaatctagattta 2554541  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||| |||||||| |||||||| || |  || ||||||||||| | |||||  || ||||||||||| |||   ||||| || ||||||||||||     
T  2554542 atacgattcacaacaggttcccaaaacaa-agtcgacgcggatcacccctaatcgagagccccaaatagagaaacaagattttacctactttgcaaccca 2554640  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| || ||||| ||||||||||| ||||| ||||||||    
T  2554641 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaagtttactttcaaacccgatatagcttcaaacaa 2554740  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||| | |||| ||||||  || || ||||| |||||||||    
T  2554741 aacaagaccagccctcagcgcccgcacattagcccaactt 2554780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 26206192 - 26206292
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    ||||||||||||||||||||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| |||||||||||| |||| ||| ||||    
T  26206192 gtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccc 26206291  T
Q  140 a 140  Q
    |    
T  26206292 a 26206292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 33640782 - 33640876
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||||||||||  | ||| ||||||||||| ||||| ||||||| |||||| |||| |||||  || |||||||| |||||||| |||||    
T  33640782 acagatttgagaagaaccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctagactttatacgattcacaacagggtccca 33640876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 15674669 - 15674791
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||     |||||||||||||| || ||||| |||| |||||| |||| ||||| ||||    
T  15674669 aagtgcatagacaggcagagaggtcaagacagatttgagtagaacccagcgaccaccaaaagagagaaaccgtctattccaacccgacagtctagattta 15674768  T
Q  118 atacgattaacaacaggctccca 140  Q
    |||||||| |||| ||| |||||    
T  15674769 atacgattcacaataggttccca 15674791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 12673418 - 12673296
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| || || |||||||||||| |  | ||||| || |  |||||||| || ||||  ||| |||| |||||||||| || ||||| ||| ||||    
T  12673418 gcatagacaggcagagcagtcaggacatacattagaaggatcaagcgaccaccgaaggaaaaaaactgactttgccaaccagccagtctagattttatac 12673319  T
Q  122 gattaacaacaggctcccaaaat 144  Q
    | |||||||||||||||| ||||    
T  12673318 ggttaacaacaggctccccaaat 12673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 10363248 - 10363289
Alignment:
Q  283 aaatttaccttcaaacccgacatagcctcaaacaaaaccaaa 324  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  10363248 aaatttactttcaaaccagacatagcctcaaacaaaatcaaa 10363289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 47622380 - 47622034
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||||||||| || ||||||||| |||||||||||||||||| ||||    
T  47622380 aagtgcatagacaggaagagcagtcaggacagactttagaaggattaggcgaccaccaaaagagagaaaccgactacgccaaccagacaatctagattta 47622281  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||| ||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||  ||| | |||| ||| || |||     
T  47622280 attcgattaacaacaggttcccaaaataataactgtcgagggtcacccccaatcggaaggcccaaataaaggaacgacattgtacccaatttacagccca 47622181  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||| ||||  ||||||  ||||||||| ||||| ||||| ||||| |  |  ||  |||||||  |||| || |||||||  |||||||||||||||||    
T  47622180 acactgaagtcgcttcaatcaaccaagaagcattaatattaacccctatcaacgaacttttatgataattaactttcaaactagacatagcctcaaacaa 47622081  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaacttatcttcc 364  Q
     || | ||||||||||||||| |||||||| ||||||||| ||||||    
T  47622080 gacaagaccaaccctcaaagcacgaacattagcccaacttttcttcc 47622034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 6051440 - 6051756
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  6051440 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 6051539  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  6051540 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 6051639  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  ||||||| ||||| || ||||||||||||||||| ||||||||    
T  6051640 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaacttttatgaaaattaactttcaaacccgacatagcttcaaacaa 6051739  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  6051740 aactagaccagccctca 6051756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 35541871 - 35542187
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || |||||||| | ||| ||||| || ||||| |||||||| |||||||||| |||||||  ||||    
T  35541871 aagtgcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccacctaaggaaagaaaccgactttgccaaccagccaatctatattta 35541970  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| || |||||||| |||||||| || |  || || ||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  35541971 atacggttcacaacaggttcccaaaacaaaagtcgacgaggatcgccgccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 35542070  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    ||||||| || ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||| ||||||||||| |||||||     
T  35542071 acacagatgccgcttctgacaaccacgaatcattaatattgacccctaccagagaactcttatgaaaattaactttcaatcccgacatagcttcaaacag 35542170  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  35542171 aacaagaccagccctca 35542187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 51052718 - 51052820
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  51052718 aagtgcatagacaggtagagcagtcaggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 51052817  T
Q  118 ata 120  Q
    |||    
T  51052818 ata 51052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 5497945 - 5498045
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    ||||||||||||||||||||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| |||||||||||| |||| ||| ||||    
T  5497945 gtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccc 5498044  T
Q  140 a 140  Q
    |    
T  5498045 a 5498045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 25504267 - 25504179
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacagg 134  Q
    ||||||||||||||||  | ||| ||||||||||| ||||| ||||||| |||||| |||| ||||| ||| |||||||| ||||||||    
T  25504267 acagatttgagaagaaccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctagattttatacgattcacaacagg 25504179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 48072707 - 48072607
Alignment:
Q  40 gtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccc 139  Q
    |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| |||||||||||| |||| ||| ||||    
T  48072707 gtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccc 48072608  T
Q  140 a 140  Q
    |    
T  48072607 a 48072607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 32352615 - 32352493
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |  |||| |||||||||||| ||||  |  |||||||||||||| || |||||||||| |||||| |||| ||||| ||||    
T  32352615 aagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagattta 32352516  T
Q  118 atacgattaacaacaggctccca 140  Q
    |||| ||| |||| ||| |||||    
T  32352515 atacaattcacaataggttccca 32352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 26721540 - 26721595
Alignment:
Q  88 cgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| ||| ||||||||    
T  26721540 cgactattccaaccagacaacctagttttaatgcgattcacaataggttcccaaaa 26721595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 105146 - 104830
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  105146 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 105047  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  105046 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 104947  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  104946 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 104847  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  104846 aactagaccagccctca 104830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 4937431 - 4937115
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||||| || |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||    
T  4937431 aagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagattta 4937332  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    |||||||  || ||||| |||||||| || |  || |||||||| || |||||||  || ||||||||||| ||||| ||||| || |||||||| |||     
T  4937331 atacgatccaccacaggttcccaaaacaaaagacgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcacccca 4937232  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||||||||||||||| ||||||||    
T  4937231 acacagaagccgcttctgacaaccacgaatcattaatattaacccctaccagagaactcttatgaaaattaactttcaaacccgacatagcttcaaacaa 4937132  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  4937131 aactagaccagccctca 4937115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 17721472 - 17721811
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || |||||||||||  | || |||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  17721472 aagtgcatagacaggtagagcagtcaggacgaacttaagaagaaccaaacgaccaccaaaagaaaggaaccgactttgccaaccagacaatctattttta 17721571  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    || |||||||||||||| |||||||| ||||| || ||||||||||| |||||||  || ||||||||||| ||||| ||||| || ||||||||||||     
T  17721572 atgcgattaacaacaggttcccaaaacaataatcgacgcggatcacccccaatcgagagccccaaatagagaaacgggattttacctactttgcaaccca 17721671  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||| ||||| ||||| |||||||| ||  || | ||||| ||||| || | |||  | ||||| ||||| || ||||| ||||||||||| |||| |||    
T  17721672 acacggaagccgcttctgacaaccacgaaccagtaatattaacccctaccaaagaactcttatgaaaattaactttcaatcccgacatagcttcaagcaa 17721771  T
Q  318 aaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    ||  |  ||| ||||||| || || ||||| |||||||||    
T  17721772 aatgagtccagccctcaacgcccgcacattagcccaactt 17721811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 29968815 - 29969127
Alignment:
Q  22 gcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatac 121  Q
    |||||||| || || ||||||||||| || || |||||||| | ||| ||||| || |||||||||||||| |||||||||| |||||||| ||||||||    
T  29968815 gcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccaccgaaggaaaggaaccgactttgccaaccagccaatctagatttaatac 29968914  T
Q  122 gattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacac 221  Q
    | || |||||||| |||||||| || |  || || ||| |||| |||||||  || ||||||||||| ||| | ||||| || |||||||| ||| ||||    
T  29968915 ggttcacaacaggttcccaaaacaaaagtcgacgtggaccacccccaatcgagagccccaaatagagaaacaggattttacctactttgcaccccaacac 29969014  T
Q  222 agaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaacc 321  Q
    |||||| ||||| |||||||| ||  |||| ||||| ||||| || |||||  | ||||| ||||| || ||||| ||||||||||| ||||||| |||     
T  29969015 agaagccgcttctgacaaccacgaatcattaatattgacccctaccagagaactcttatgaaaattaactttcaatcccgacatagcttcaaacagaaca 29969114  T
Q  322 aaaccaaccctca 334  Q
    | |||| ||||||    
T  29969115 agaccagccctca 29969127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 45993441 - 45993535
Alignment:
Q  46 acagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||||||||||  | ||||||||||||||| ||||| ||||||| |||||| |||| |||||  || |||||||| |||||||| |||||    
T  45993441 acagatttgagaagaaccaaacgaccaccaaaagagaggaaacgactattccaacctgacagtctagactttatacgattcacaacagggtccca 45993535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 11276551 - 11276463
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagaca 106  Q
    |||||||||||| || || ||||||||||| || || || ||||| | ||||||||| ||||||||||||| ||| |||||||||||||    
T  11276551 aagtgcatagacaggtagagcagtcaggacggactttaggagaatcaaacgaccaccgaaagaaaggaaccaactttgccaaccagaca 11276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 13440944 - 13441017
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctccca 140  Q
    ||||||||| |||| || |||||||||| |||||| |||| ||||| |||||||||||| |||| ||| |||||    
T  13440944 cgaccaccacaagagagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 13441017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 4078134 - 4078234
Alignment:
Q  43 aggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaa 142  Q
    ||||||||||| | |||||| ||||| || |||||||| |  || ||||||| |||||||||||| || | |||||| ||||| |||| ||| |||||||    
T  4078134 aggacagattttaaaagaatcagacggccgccaaaagataaaaaacgactattccaaccagacaacctggctttaatgcgattcacaataggatcccaaa 4078233  T
Q  143 a 143  Q
    |    
T  4078234 a 4078234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 28739898 - 28739843
Alignment:
Q  283 aaatttaccttcaaacccgacatagcctcaaacaaaaccaaaccaaccctcaaagc 338  Q
    ||||| ||||||| ||| |||||| | ||||||||||||||| |||||||||||||    
T  28739898 aaattaaccttcagaccagacataacttcaaacaaaaccaaaacaaccctcaaagc 28739843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 34232584 - 34232663
Alignment:
Q  64 agacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||| ||||||||||| |  || ||||||| |||||||||||| |||| ||| |||||||| |||| ||| ||||||||    
T  34232584 agacggccaccaaaagataaaaaacgactattccaaccagacaacctagcttttatacgattcacaaaaggttcccaaaa 34232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22819020 - 22818952
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaa 86  Q
    |||||||||||| ||||| |  | ||||||||  || ||||||| |||||||||||||||||| |||||    
T  22819020 aagtgcatagacaggaagagaggacaggacagccttaagaagaactagacgaccaccaaaagataggaa 22818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 43572427 - 43572503
Alignment:
Q  67 cgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||||||| || || ||||| |||| ||| || |||||||||| |||||||||||| || ||| | ||||||||    
T  43572427 cgaccaccaaacgagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacatgatcccaaaa 43572503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 4089 - 4405
Alignment:
Q  18 aagtgcatagacgggaagtgcagtcaggacagatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagtttta 117  Q
    |||||||||||| || || ||||||||||| || || |||||||| | ||||||||| || |||||||||| ||| ||| |||||||||| |||| ||||    
T  4089 aagtgcatagacaggtagagcagtcaggacggactttagaagaatcaaacgaccaccgaaggaaaggaaccaactttgcgaaccagacaacctagattta 4188  T
Q  118 atacgattaacaacaggctcccaaaataataaccggcgcggatcacctccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccct 217  Q
    ||||| || |||||||| |||||||| || |  || || |||||||| |||||||  || ||||||||||| ||||||||||| || |||||||| |||     
T  4189 atacggttcacaacaggttcccaaaacaaaagtcgacgtggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcacccca 4288  T
Q  218 acacagaagctgcttcagacaaccaagaggcattgatattcacccccacgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaa 317  Q
    |||||||||| ||||| |||||||| ||  | || ||||| ||||| || |||||  | ||||||||||| || ||||||||||||||||| |||||||     
T  4289 acacagaagccgcttccgacaaccacgaatcgttaatattaacccctaccagagaactcttatggaaattaactttcaaacccgacatagcttcaaacag 4388  T
Q  318 aaccaaaccaaccctca 334  Q
    ||| | |||| ||||||    
T  4389 aacaagaccagccctca 4405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 166 - 357
Target Start/End: Original strand, 593 - 784
Alignment:
Q  166 ccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaaccctacacagaagctgcttcagacaaccaagaggcattgatattcaccccca 265  Q
    ||||||||||| ||||||||||||||||  | ||| | ||||||||||||  ||||| |||||| ||||| ||||||||| ||||||||||| || || |    
T  593 ccaatcggaagacccaaatagaggaacgacactttacgcactttgcaacctaacacaaaagctgtttcagccaaccaagaagcattgatattgacaccaa 692  T
Q  266 cgagagagattttatggaaatttaccttcaaacccgacatagcctcaaacaaaaccaaaccaaccctcaaagcgcgaacatttgcccaactt 357  Q
    |  ||||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||| ||||||  || ||||||||||||||||||    
T  693 cccgagagcttttatggaaatttactttcaaaccagacatagctttaaacaaaaccaagccagccctcattgcacgaacatttgcccaactt 784  T

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Target: scaffold0179 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 8439 - 8494
Alignment:
Q  88 cgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| ||| ||||||||    
T  8439 cgactattccaaccagacaacctagttttaatgcgattcacaataggttcccaaaa 8494  T

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Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 13373 - 13428
Alignment:
Q  88 cgactatgccaaccagacaatctagttttaatacgattaacaacaggctcccaaaa 143  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| ||| ||||||||    
T  13373 cgactattccaaccagacaacctagttttaatgcgattcacaataggttcccaaaa 13428  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 14707 - 14677
Alignment:
Q  275 ttttatggaaatttaccttcaaacccgacat 305  Q
    |||||||||||||||||||||||||||||||    
T  14707 ttttatggaaatttaccttcaaacccgacat 14677  T

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Target: scaffold0746 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 1994 - 1953
Alignment:
Q  283 aaatttaccttcaaacccgacatagcctcaaacaaaaccaaa 324  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  1994 aaatttactttcaagccagacatagcctcaaacaaaaccaaa 1953  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 27208 - 27249
Alignment:
Q  283 aaatttaccttcaaacccgacatagcctcaaacaaaaccaaa 324  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  27208 aaatttactttcaagccagacatagcctcaaacaaaaccaaa 27249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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