View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_low_11 (Length: 336)
Name: NF15309_low_11
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 11001812 - 11002131
Alignment:
| Q |
1 |
aagacaccctttccccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaac |
100 |
Q |
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| T |
11001812 |
aagacaccctttccccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaac |
11001911 |
T |
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| Q |
101 |
acttccaacacacttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagct |
200 |
Q |
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| T |
11001912 |
acttccaacacacttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggt |
11002011 |
T |
|
| Q |
201 |
attatcttagatttcctcacctatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgctaccattctttcca |
300 |
Q |
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| T |
11002012 |
attatcttagatttcctcacctatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgctaccattctttcca |
11002111 |
T |
|
| Q |
301 |
ctttccttcactttccaacc |
320 |
Q |
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|||||||| ||||||||||| |
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| T |
11002112 |
ctttcctttactttccaacc |
11002131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 10981583 - 10981896
Alignment:
| Q |
5 |
caccctttccccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacactt |
104 |
Q |
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| T |
10981583 |
caccctttctccacaagaacaatacatagccaatgtttcgaccacatttccctcaattaatttccattacattcctccaatttcattccctacaacactt |
10981682 |
T |
|
| Q |
105 |
ccaacacacttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagctatta |
204 |
Q |
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| T |
10981683 |
ccacaactcttatgcacccttgaagtttgtcaacatagcaacaaccatgttgagaacattctccattctatttccaaaaccacaaacctcaaagctgtta |
10981782 |
T |
|
| Q |
205 |
tcttagatttcctcacctatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgctaccattctttccacttt |
304 |
Q |
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| T |
10981783 |
tcttagatttcttcacctatagtgcctcacaagtaaccaagaaagtcgagatcccgacttacttttattacacttcaggtgctatctttgtagccacttt |
10981882 |
T |
|
| Q |
305 |
ccttcactttccaa |
318 |
Q |
| |
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| T |
10981883 |
ccttcattttccaa |
10981896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 10967656 - 10967943
Alignment:
| Q |
4 |
acaccctttccccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacact |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||| | | ||||| ||||||| || ||||| ||||| || || ||||||| ||||||| | | |||||||| |
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| T |
10967656 |
acaccctttctccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacact |
10967755 |
T |
|
| Q |
104 |
tccaacac-ac--ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagct |
200 |
Q |
| |
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|||| ||| || |||||||| ||||| |||| ||| ||||||| | |||||||||| |||||| | ||||||||||||||||||||| |||||| |
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| T |
10967756 |
tccaccaccacctttacttacccttgagctctctcaccaaagcaataactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaagga |
10967855 |
T |
|
| Q |
201 |
attatcttagatttcctcacctatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgcta |
288 |
Q |
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||||||||||||| ||||| |||| |||||| ||||||| || || ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
10967856 |
gttatcttagattttctcacatataatgcctcgaaagtcactacaaagcttgaaattcccacttacttttacttcacttcaggtgcta |
10967943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 11079090 - 11079232
Alignment:
| Q |
141 |
agcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagctattatcttagatttcctcacctatagtgcctcacaagtca |
240 |
Q |
| |
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|||||||| |||||||| | ||||| | |||||| | |||||| ||||| | ||||| |||| || |||||||| | ||||||||| |||||||| | |
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| T |
11079090 |
agcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagtta |
11079189 |
T |
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| Q |
241 |
ccaccaaccttgaaattcctacttacttttactatacttcagg |
283 |
Q |
| |
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||| ||| ||||||||||| |||||||||||||| || ||||| |
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| T |
11079190 |
ccaacaatcttgaaattccaacttacttttactacacctcagg |
11079232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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