View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15309_low_13 (Length: 272)

Name: NF15309_low_13
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15309_low_13
NF15309_low_13
[»] chr7 (3 HSPs)
chr7 (20-195)||(21867752-21867927)
chr7 (20-195)||(47024064-47024239)
chr7 (197-226)||(21867745-21867774)
[»] chr8 (3 HSPs)
chr8 (20-195)||(18630252-18630427)
chr8 (20-195)||(18166698-18166873)
chr8 (28-195)||(15362831-15362998)
[»] chr5 (4 HSPs)
chr5 (20-195)||(1592907-1593082)
chr5 (20-195)||(7955510-7955685)
chr5 (197-226)||(1593060-1593089)
chr5 (197-226)||(7955663-7955692)
[»] chr1 (1 HSPs)
chr1 (20-195)||(34025160-34025335)
[»] chr4 (4 HSPs)
chr4 (20-195)||(30200289-30200464)
chr4 (20-195)||(45112723-45112877)
chr4 (197-226)||(30200282-30200311)
chr4 (197-226)||(45112716-45112745)
[»] chr2 (2 HSPs)
chr2 (28-195)||(12336150-12336317)
chr2 (66-192)||(604031-604157)
[»] chr3 (3 HSPs)
chr3 (197-262)||(20320974-20321037)
chr3 (197-262)||(34151719-34151782)
chr3 (159-195)||(20320960-20320996)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 21867927 - 21867752
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  21867927 tctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccaccattctgttgctgttg 21867828  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  21867827 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 21867752  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 47024064 - 47024239
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47024064 tctcggcttgccaggctgctgtaccagcagagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccactctgttgcagctg 47024163  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  47024164 catgtcaaaggtgttgggcagcttgccagccttcaattaaatggcgtgcaacaacttgaaagagggtactcttgtt 47024239  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 21867774 - 21867745
Alignment:
Q  197 acttgaaacagggtactcttgttatgtatt 226  Q
    ||||||||||||||||||||||||||||||    
T  21867774 acttgaaacagggtactcttgttatgtatt 21867745  T

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Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 18630252 - 18630427
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  18630252 tctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccaccattctgttgctgttg 18630351  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  18630352 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 18630427  T

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Target: chr8; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 18166698 - 18166873
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  18166698 tctcggcctgccaggctgctgtactagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccaccattctgttgctgttg 18166797  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  18166798 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 18166873  T

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Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 15362831 - 15362998
Alignment:
Q  28 tgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaa 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  | ||||||||||    
T  15362831 tgccaggctgcagtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccaccattctgttgatgttgcatgtcaa 15362930  T
Q  128 aggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||||||||||||    
T  15362931 aggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatggtactcttgtt 15362998  T

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Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 1592907 - 1593082
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  1592907 tctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccaccattctgttgctgttg 1593006  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  1593007 catgtcaaaggtgttgggcagtctgccagccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 1593082  T

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Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 7955510 - 7955685
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||    
T  7955510 tctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccaccattctgttgctgttg 7955609  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  7955610 catgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 7955685  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 1593060 - 1593089
Alignment:
Q  197 acttgaaacagggtactcttgttatgtatt 226  Q
    ||||||||||||||||||||||||||||||    
T  1593060 acttgaaacagggtactcttgttatgtatt 1593089  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 7955663 - 7955692
Alignment:
Q  197 acttgaaacagggtactcttgttatgtatt 226  Q
    ||||||||||||||||||||||||||||||    
T  7955663 acttgaaacagggtactcttgttatgtatt 7955692  T

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Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 34025160 - 34025335
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  34025160 tctcggcctgccaggctgctgtactagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccaccattctgttgctgttg 34025259  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  34025260 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 34025335  T

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Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 30200464 - 30200289
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  | ||    
T  30200464 tctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatcccccattctgttgttgttg 30200365  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  30200364 catgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 30200289  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 45112877 - 45112723
Alignment:
Q  20 tctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctg 119  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||                       
T  45112877 tctcggcctgccaggctgctgtaccagtggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatc------------------- 45112797  T
Q  120 catgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
      |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  45112796 --tgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 45112723  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 30200311 - 30200282
Alignment:
Q  197 acttgaaacagggtactcttgttatgtatt 226  Q
    ||||||||||||||||||||||||||||||    
T  30200311 acttgaaacagggtactcttgttatgtatt 30200282  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 45112745 - 45112716
Alignment:
Q  197 acttgaaacagggtactcttgttatgtatt 226  Q
    ||||||||||||||||||||||||||||||    
T  45112745 acttgaaacagggtactcttgttatgtatt 45112716  T

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Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 12336150 - 12336317
Alignment:
Q  28 tgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaa 127  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  | ||||||||||    
T  12336150 tgccaggctgttgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccaccattctgttgttgttgcatgtcaa 12336249  T
Q  128 aggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    ||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||||||||||||    
T  12336250 aggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatggtactcttgtt 12336317  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 604157 - 604031
Alignment:
Q  66 tgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggca 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||     
T  604157 tgcgagtttcgatgactgatattcgagcgcgcatccaccattctgctgctgttgcatgtcaaaggtgttgggcagtctgccagccttcaattaaatggcg 604058  T
Q  166 tgcaacaacttgaaacagggtactctt 192  Q
    || ||||||||||||||||||||||||    
T  604057 tgtaacaacttgaaacagggtactctt 604031  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 20320974 - 20321037
Alignment:
Q  197 acttgaaacagggtactcttgttatgtattnnnnnnnntaagtatataccgtgaccaatacctttg 262  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||    
T  20320974 acttgaaacagggtactcttgttatgtatt--aaaaaataagtatataccctgaccaatacctttg 20321037  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 34151719 - 34151782
Alignment:
Q  197 acttgaaacagggtactcttgttatgtattnnnnnnnntaagtatataccgtgaccaatacctttg 262  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||    
T  34151719 acttgaaacagggtactcttgttatgtatt--aaaaaataagtatataccctgaccaatacctttg 34151782  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 20320960 - 20320996
Alignment:
Q  159 aatggcatgcaacaacttgaaacagggtactcttgtt 195  Q
    |||||| | ||||||||||||||||||||||||||||    
T  20320960 aatggcgtacaacaacttgaaacagggtactcttgtt 20320996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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