View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15309_low_2 (Length: 644)
Name: NF15309_low_2
Description: NF15309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15309_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 630
Target Start/End: Original strand, 39945232 - 39945837
Alignment:
| Q |
20 |
aaattgaatattggagctaataaaattcacttcatgaccgtgaaaagaaaactatttactacctataatggaaattacaaggcgatctcaatagactgag |
119 |
Q |
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| T |
39945232 |
aaattgaatattggagctaataaaattcacttcatgaccgtgaaaagaaaactatttac---ctataatggaaattacaaggcgatctcaatagaccgag |
39945328 |
T |
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| Q |
120 |
agaaggttaaccaaactgatgaacatagtcttgtcacaataaaagaggagtaggactttcgaacactctgacatggaatatttgactttttaacgaataa |
219 |
Q |
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| T |
39945329 |
agaaggttaaccaaactgatgaacataatattgtcacaataaaagaggagtagtactttcaaacactctgacatggaatatttgaccttttaacgaataa |
39945428 |
T |
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| Q |
220 |
ttacttattttataatattaaggttaaccaaaccggtgaagatagtcttgtcgcaataaaacaagaggtagtactttcgaagactctaacataaaatact |
319 |
Q |
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| T |
39945429 |
ttacttattttataatattaaggttaaccaaaccggtgaagatagtcttgtcgcaataaaacaagaggtagtactttcgaagactctgacataaaatact |
39945528 |
T |
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| Q |
320 |
taactttataaagaataattatttatattttataatatttaagaagtgtcctgaaacactccttaaaaagaccgatatgattattattcaacatctcctt |
419 |
Q |
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| T |
39945529 |
ttactttataaaaaataattgcttatattttataat--ttaagaagtgtcatgaaacactccttaaaaagaccgatatgactattattcaacatctcctt |
39945626 |
T |
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| Q |
420 |
tcaaattcccatttacgacggccagaagcatatttatgcatgacgacaagttctcctaaattgaaacgtgataacacatataagggcatggtttacatac |
519 |
Q |
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| T |
39945627 |
tcaaattcccatttacgacggccagaagcatgtttatgcatgacgacaagttctcctaaattgaaacgtgataacacatataagggcatggtttacatac |
39945726 |
T |
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| Q |
520 |
aagacttattatcaagtaaacatgaaataccagatcaattttgcatgtgcacaaacacaagtcacacacgcaaatgaaaacacataccgttcgtgcagaa |
619 |
Q |
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| T |
39945727 |
aagacttattatcaagtaaacatgaaataccagatcaattttgcatgtgcacaaacacaagtcacacacgcaaatgaaaacacataccgttcgtgcagaa |
39945826 |
T |
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| Q |
620 |
tgtcacaggtt |
630 |
Q |
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| T |
39945827 |
tgtcacaggtt |
39945837 |
T |
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